Sequence
atgc intronic sequence ATGC exonic sequencegttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G40190.1 (Glycine max), 3'ss of exon 10
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
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gttactgatttcttttc------aagcttgcaag-atactttgctctgtggactctatga-aagtacatattttcagtgcagtttttgttgatattatttagGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCA
upper sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G29640.2 (Glycine max), 3'ss of exon 8
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacat-cagaaatatttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
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----------------gttacagacttctttt--catgcttg---ctctgtggaatgtatgaaagtacatattctcactgcagtttttgttgatattatttagGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCA
upper sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G20690.1 (Glycine max), 3'ss of exon 9
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
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---gtggttattttcttttcaag----cttgtaagata-ctattgctgtggagttga-cgtacaggttctcactgctgttttgtgtctggatatgtttttagGTGTGAAATATGGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACACTTCA
upper sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07340.4 (Glycine max), 3'ss of exon 10
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatat---ttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
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--------------------------gtggttgttttcttttcaagcttgtaagatactattgctttgaagtacaggttctcactgctgttttgtgtctggatagGTGTGAAATATGGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCA
upper sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 10
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatat---ttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
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-----------------------------gttgttttcttttcaagcttgtaagatactattgctttgaagtacaggttctcactgctgttttgtgtctggatagGTGTGAAATATGGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCA
upper sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 3'ss of exon 10
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttt--tcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
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-------gtcagtttcctttctaatttctctaagcttggtcctgagtctaagtga-atggagaatcaacgagtatcatttttcttggatgaaaatcagTATCAGGTATAACGTATAGTGGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGACAATACCCGTTTCTTGCGGATAC------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
cttttcctgtttatt CT-rich tract
atcagaaatattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacagGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA