Sequence
atgc intronic sequence ATGC exonic sequence...catgaaagaaaccctttttaatccaatgcatcatgtccatattgttataaagcataatgcaaatataaacttatagtgaaactctgtttttctttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G20630.1 (Glycine max), 3'ss of exon 10
-------------------------------------------catgaaagaaaccctttttaatccaatg-catcatgtccatat-------tgttataaagcataatgcaaatataaacttatagtgaaactctgtttttc-tttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
|| | | || | | | || ||| || | | |||| | || | ||| | || | | || | | |||| | | || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||
gtaaaaccaaatttaaactagatgttgacagaatatactagagtttgtgctattgctattgtgaataattggcatttgctctaactcttggcgtgttttgaattttcatgaatgcatgagtat-taaccgagttatgttctccactttgcagTCTGATGGATTCCCCACTCTTCTCTTCTTCCCAGCAGGAAACAAGAGTTCTGACCCT
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07260.1 (Glycine max), 3'ss of exon 10
--------------------------------------catgaaagaaaccctttttaat-ccaatgcatcatgtccatattgttataaagcataatgcaaat----ataaacttatagtg------aaactctgtttttc-tttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
|| | || || | |||| | | | | | || | ||| || || | ||| | | |||| | | || ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||
gtaaacccaaatttaaactagatgttgacagaatatactatagtttgtgctattgctattatcaataatttgcatttgctctaacacttggtatgttttgaattttcatgaatgttgagtactaaccgagttatgttctccactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G40130.1 (Glycine max), 3'ss of exon 10
---catgaa-agaaaccctttttaatccaatgcatcatgtccatattgttataaagcataatgcaaat-ataaacttatagtgaaactctgtttttctttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
|| | ||| || || || | || ||| | | || || || || ||| | || ||| ||| | | |||| | ||| ||||||| |||||||| ||||| |||||||| |||||||||||||||| ||| ||
atgcagaatcggaagccgttattcctttcataatccatttttactgagtaatgaaagatctgacaatttattggtccatattga---tttattttaact--gcagCCTGATGGATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataaagcataatgcaaatataaacttatagtgaaactctgtttttctttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
ctctgtttttcttt CT-rich tract
ataatgcaaatataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catgaaagaaaccctttttaatccaatgcatcatgtccatattgttataaagcataatgcaaatataaacttatagtgaaactctgtttttctttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
- - aaagaaa
- - - - - -ccctttt
- - - - - - - - - - - ccaatgc
- - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - ataaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatata