Sequence
atgc intronic sequence ATGC exonic sequence...aaaccctttatatgcaattcttactttgggactggtaatttatatctgaaattattctttgacagcaattgctataagaactttgaatcttctggtgcagGTGATTTGCTTATGCTTTTGAATGTGTCATCTGATGAGAAAGTTTTGCCCACAACGTATGGTGAACTGAGACCACCTCTTGGGAAGCATCGGCTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G29710.2 (Glycine max), 3'ss of exon 10
aaaccctttatatgcaattcttactttgggactggtaatttatatctgaaattattctttgacagcaattgctataagaactttgaatcttctggtgcagGTGATTTGCTTATGCTTTTGAATGTGTCATCTGATGAGAAAGTTTTGCCCACAACGTATGGTGAACTGAGACCACCTCTTGGGAAGCATCGGCTGAAG
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agatgttgtgactatgttttgtatggtacaaacaaatctgtctaattttgtttaagtatccatatcacatgatccttaacatttttttccttgtctgcagGCGAATTGCTTATGCTTTTGAATGTATCATCTGATGAAAAAGTATTGCCTACAACATATGGAGAATTGAGACCTCCACTCGGGAAGCATCGATTAAAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G40050.1 (Glycine max), 3'ss of exon 10
aaaccctttatatgcaattcttactttgggactggtaatttat--atctgaaattattctttgacagca-attgctataagaactttgaatcttctggtgcagGTGATTTGCTTATGCTTTTGAATGTGTCATCTGATGAGAAAGTTTTGCCCACAACGTATGGTGAACTGAGACCACCTCTTGGGAAGCATCGGCTGAAG
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--gaatgttgtgactatgttttgtttggtagatacaaatctgtcaaattttgttgaagtatccatatcacatcatccttaagattttttttcttgtc-tgcagGTGAATTGCATATGCTTTTGAATGTATCATCTGATGAAAAAGTATTACCTACAACATATGGAGAATTGAGACCTCCACTCGGGAAGCATCGTTTAAAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G08100.1 (Glycine max), 3'ss of exon 10
aaaccctttatatg-caat--tcttactttgggactggtaatttatatctgaaattattctttgacagcaattgc--tataag-aactttgaatcttctggt-gcagGTGATTTGCTTATGCTTTTGAATGTGTCATCTGATGAGAAAGTTTTGCCCACAACGTATGGTGAACTGAGACCACCTCTTGGGAAGCATCGGCTGAAG
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-------tgatatggcaacaattttcttctatttgtgacaatgtctgacacattttgttcaagcagctctatcacatgataagtaagattgcacttcttgtttacagGTGAATTCCTTGTGCTTTTGGATTTGTCATCTGATAATAAGGTACTGCCTACAACATATGGTGAATTGAGACCTCCGCTTGGCAAGCATCGATTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgaaattattctttgacagcaattgctataagaactttgaatcttctggtgcagGTGATTTGCTTATGCTTTTGAATGTGTCATCTGATGAGAAAGTTTTGCCCACAACGTATGGTGAACTGAGACCACCTCTTGGGAAGCATCGGCTGAAG
ctttgac putative branch site (score: 4)
tcttct putative PPT
attattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaccctttatatgcaattcttactttgggactggtaatttatatctgaaattattctttgacagcaattgctataagaactttgaatcttctggtgcagGTGATTTGCTTATGCTTTTGAATGTGTCATCTGATGAGAAAGTTTTGCCCACAACGTATGGTGAACTGAGACCACCTCTTGGGAAGCATCGGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
aaaccct
- - - - - tatgcaa
- - - - - - - - - - - - - - ggactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaa