1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgaacgaccatcaatttcttttgttattttttagattatattgattttcatttgaagcaacaagcttcccagtaggtttgaccttcttatgacccaaccataaaatttcctgatgcagATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCCTACAGCTGCCCATTGCATTAAGAACAGAGGCTATCAAAG
species | Vitis vinifera |
transcript | Vv06s0004g01650.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCCAAGGCAGCAATAAATGCCCAGGCTTTGCCTGTACCTGCTCCAA ATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCCEST: gi|37184261|gb|CF603615.1|CF603615
genomic: TGGTGCCAAGGCAGCAGTAAATGCCCAGGCTTTGCCTGTACCTGCTCCAAgtgcgaacga ... cctgatgcagATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCC
EST: TGGTGCCAAGGCAGCAGTAAATGCCCAGGCTTTGCCTGTACCTGCTCCAA ATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCC
genomic: TGGTGCCAAGGCAGCAGTAAATGCCCAGGCTTTGCCTGTACCTGCTCCAAgtgcgaacga ... cctgatgcagATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCC
gcttcccagtaggtttgaccttcttatgacccaaccataaaatttcctgatgcagATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCCTACAGCTGCCCATTGCATTAAGAACAGAGGCTATCAAAG
tcctgat putative branch site (score: 3)
tttcct CT-rich tract
ataaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgaacgaccatcaatttcttttgttattttttagattatattgattttcatttgaagcaacaagcttcccagtaggtttgaccttcttatgacccaaccataaaatttcctgatgcagATAGTTTCCTATCATTCAGAAGAAAATGGAGCCCTGATGACAAGTTGACCCTACAGCTGCCCATTGCATTAAGAACAGAGGCTATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC