1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctatctttctttggctttatgttttctttggcttcttccactattttctctcctcttagttggtgatacttacggtattgcttttgatgcttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG
species | Vitis vinifera |
transcript | Vv05s0094g01110.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCEST: gi|71883236|gb|DT032291.1|DT032291
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCEST: gi|71885123|gb|DT034178.1|DT034178
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTGTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCEST: gi|30301279|gb|CB978073.1|CB978073
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCEST: gi|30136176|gb|CB921514.1|CB921514
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCEST: gi|110362279|gb|EC925800.1|EC925800
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCEST: gi|33404575|gb|CF210202.1|CF210202
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCEST: gi|110375381|gb|EC940362.1|EC940362
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
EST: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAG CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
genomic: TTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGgtgaatatct ... cttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCC
tttctctcctcttagttggtgatacttacggtattgcttttgatgcttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG
atactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatctttctttggctttatgttttctttggcttcttccactattttctctcctcttagttggtgatacttacggtattgcttttgatgcttgtaccagCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - tggcttt
- - - - - - - - - - - - - - - - - tcttcca