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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaagttcatcagtacggatataaatggttttttgcaatattgttgctaatgcagtatttcaagctctttgttagagggtgcatttagttgaaatttggaatggaaagatgatgcacatgtcaatgcaacattgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGATAATACAGTTTGCTCAGTTTTTACCCGACCTACG

Basic information

species Vitis vinifera
transcript Vv05s0077g02310.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416775|gb|EC982779.1|EC982779
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|77578499|gb|DV218043.1|DV218043
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|254917683|gb|GR903335.1|GR903335
EST:     GTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: GTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|349818063|gb|FQ408838.1|FQ408838
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|351038798|gb|FQ464664.1|FQ464664
EST:     CTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: CTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|110724126|gb|EE099691.1|EE099691
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|161707291|gb|FC057696.1|FC057696
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaaatttggaatggaaagatgatgcacatgtcaatgcaacattgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGATAATACAGTTTGCTCAGTTTTTACCCGACCTACG
                                           attgttt  TA-rich tract