Sequence
atgc intronic sequence ATGC exonic sequence...ttactgatcaaaaaaaaaaaaaaaaagttttctgtttgaattaattaactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os10g33420.1 (Oryza sativa), 3'ss of exon 10
ttactgatcaaaaaaaaaaaaaaaaagttttctgtttgaattaattaactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
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tgcatcacaagcaagtgtcaaaccaaaccttctcccttgttccacatattcttgcatcatgtgttgcctgcacgagctaacagactagcatttgttgcagAACAGCAAAGGATAATCCTCCGGTTACTTTTGCTATTGCTGCCTGTGAAACTCAGAATGTGAATGTGACAGTCTTGCCTGTATTTGGCCTCTCTGGAGAA
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G33610.1 (Glycine max), 3'ss of exon 13
ttactgatcaaaaaaaaaaaaaaaaagttttctgtttgaattaattaactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
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gtgtgggtgggtatgtatgtatttgtaattctcttgtctcctaaactgttatgtaaatgatgattttggtgtatatattaaggtcattccaatattgcagGACAGCGAAAGGAAACCCTCCTGTTACCTTTGCCATTGCTGCATGTGAGACACAGAATGTTAATGTTTCTGTTTTGCCAAGTTTTGGGCTGTCTGAAGAA
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G33990.1 (Glycine max), 3'ss of exon 12
ttactgatcaaaaaaaaaaaaaaaaagttttctgtttgaattaattaactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
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gtgtgggtgggaatgtatatatttgtaattctcctgtctcctaaactgctatgtaaatgatgattttggtctatatattaaggtcattccaatattgcagGACAGCAAAAGGAAACCCTCCTGTTACTTTTGCCATTGCTGCATGCGAGACACAGAATGTTAATGTTTCTGTTTTGCCAAGTTTTGGGTTGTCTGAAGGA
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G24180.1 (Arabidopsis thaliana), 3'ss of exon 13
ttactgatcaaaaaaaaaaaaaaaaagttttctgtttgaattaattaactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
| | | || | || | | | || || || || | ||||| | | | | | | | || ||| ||||| | |||| || ||||||||||| ||||| || ||||| | ||| ||||||||||||| ||| ||||| || |||| |||||| | |||||||
atgaagttgaatctgctagaatatatgcttattgcaggagaaggttgtgttctttactctaagcggatatatttgttttgaatgtgtgctgattttgcagGACAGGCAAAGGAAATCCTCCTGTTACATTTGCGATTGCTGCTTCTGAGACTCAGAATGTTAATGTAACTGTTTTACCATGCTTTGGATTGTCTGAAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
attaagaaaatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttactgatcaaaaaaaaaaaaaaaaagttttctgtttgaattaattaactctgttactatggaatttcaagtcattctgaggattaagaaaatgttgtagGACTGCTAAAGAGAACCCTCCTGTTACTTTTGCTATAGCTGCATGTGAAACTCAGAATGTTAGTGTCACTGTGTTGCCATCATTTGGACTCTCTGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -aaaaaaa
- - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattctg