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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcaccatcctatttatgttgtttgtccatgataatttgtcagctgatctctgaattttgtatctgacttctgtgttgtagCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATGCTTGGCACTTGCAAAAAG

Basic information

species Vitis vinifera
transcript Vv05s0051g00340.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110686767|gb|EE064783.1|EE064783
EST:     AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAG                         CTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
genomic: AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAGgtaggttcac ... tgtgttgtagCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
EST: gi|110691710|gb|EE070124.1|EE070124
EST:     AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAG                         CTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
genomic: AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAGgtaggttcac ... tgtgttgtagCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
EST: gi|71873742|gb|DT022797.1|DT022797
EST:     AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAG                         CTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
genomic: AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAGgtaggttcac ... tgtgttgtagCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
EST: gi|77586617|gb|DV222437.1|DV222437
EST:     AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAG                         CTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG
genomic: AGAACAGGAAGGCCGCCCTGCAGGATCTGGCAACTCTCACAGGAGGGGAGgtaggttcac ... tgtgttgtagCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgataatttgtcagctgatctctgaattttgtatctgacttctgtgttgtagCTTATAACGGAAGAGCTTGGTTTGAACCTTGAGAAGGCAGAACTGGATATGCTTGGCACTTGCAAAAAG
                                   atctgac  putative branch site (score: 3)
                                         cttctgt  CT-rich tract
                           aattttgtat  TA-rich tract