Sequence
atgc intronic sequence ATGC exonic sequence...gtggttcaatgtggtccccgatcctaaagaaaccatcactaattgtcatggcttatttcatgtatatatgtgtaataatttgaaattttcactgtttcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os07g11000.1 (Oryza sativa), 3'ss of exon 10
------------------------------------------------------gtggttcaatgtggtccccgatcctaaagaaaccatcactaattg-tcatggct-tatttcatgtatatatgtgtaataatttgaaattttcactgtttcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTAT
| ||| | ||| | || | | | | || || ||| || | || |||| || || | | | ||| | || |||| || |||||| | |||||||||| ||||||||| | || || || |||||||||| || || ||||||||||||||||| ||||| || | || ||
gtttgtttttgccgattctttttttttttttttgacgtaaaatttttgccgattcttgtttgaaaattaagatgattgaagagtgaaccttattatttaaccattactatgttctatgtgatcatcagtgtttgatactacctttt-ccattccagGTCTCAAAGATCTGACTGATTTTCTCCCTGCATCTCTTGCGACAATAGTAAGTTACTTTTCAGCCGAAGTAACACGAGGTGTTTGGAAACCGGCATTCAT
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 11
gtggttcaatgtggtccccgatcctaaagaaaccatcactaattgtcatggcttatttcatgtatatat--gtgtaataatttgaaa-----ttttcactgtttcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTAT
| || | | | || | || ||| | || | || || ||||| | | | || || ||| ||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||| |||| || ||||| || || |||||
---tctaaacatagagcaagagc--aaccaaattcatgttcatg--tagaagttccttgatgtacaccacaatatcatgataccaaaatgcctttctttaatatcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTCTGGCAACCATAATAAGTTACTTCTCTGCTGAAGTAACTAGAGGAGTTTGGAAACCTGTATTTAT
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 11
gtggttcaatgtggtccccgatcctaaagaaaccatcacta-attgtcatggcttatttcatgtatatatgt-gtaataatttgaaa-ttttcactgtttcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTAT
| ||| | | | || | | || ||| | || | | | ||| | || | || | | ||| | ||||| | |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||| | || || ||||| || || |||||
--ctctaaatatagagcaagagca-accaaattcatgttcatatagacgttccttgatgcacacaacaatatcatgataccaaaatgcttttcttaataccagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTCTGGCAACCATAATAAGTTACTTCTCTGCTGAAGTAACTAGGGGAGTTTGGAAACCTGTATTTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatggcttatttcatgtatatatgtgtaataatttgaaattttcactgtttcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTAT
ttttcact CT-rich tract
ttatttcatgtatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggttcaatgtggtccccgatcctaaagaaaccatcactaattgtcatggcttatttcatgtatatatgtgtaataatttgaaattttcactgtttcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - caatgtg
- - - - - - - - -ccgatcc
- - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - ccatcac
- - - - - - - - - - - - - - - - - - - - - - gtcatgg