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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaccactcctgctattttcttcattgtaaatgcattaaaaccccattccaatatttaatgcattacttcacccacactgacactcactggagtctgtcggtaggagtagaatttatttttgtgggatactctttgagatatctacttgagtactggaaaaaattaggctaaagtgttgacttttcttccagGTACACTGCAGAGAACTCTGTAAAATTTGGAGCTCCTCGAGATACTGATCACCCTGAACTCAGACAACCACTAGCATTGGACGTATGGGATTCTGTATTG

Basic information

species Vitis vinifera
transcript Vv05s0020g02200.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G02440.1 (Glycine max), 3'ss of exon 9
gtattaaccactcctgctattttcttcattgtaaatgcattaaaaccccattccaatatttaatgcattacttcacccacactgacactcactggagtctgtcggtaggagtagaatttatttttgtgggatactctttgagatatctacttgagtactggaaaaaattaggctaaagtgttgacttttcttccagGTACACTGCAGAGAACTCTGTAAAATTTGGAGCTCCTCGAGATACTGATCACCCTGAACTCAGACAACCACTAGCATTGGACGTATGGGATTCTGTATTG
                                                                                            | ||  |  |  |||  |     || ||||    |||  | | |||  | || || | |  | |  |    |  | | | | ||    ||        || |||||| || |||||||||||||| || ||||| |||||||| ||||| ||||||||||| |||||||||||| ||||  |||| || ||| | |||||||||
-------------------------------------------------------------------------------------------ttagacacctt--gtaacaaggctatatattggcttggt-tgcgcttaaaaatttccagt--atttgtaaccagcaattgacaaacacattatgaaccatttcagGTATACAGCAGAGAACTCTGTGAAGTTTGGGGCTCCTCGGGATACAGATCACCCTGAGCTCAGACAACCATTAGCCATGGAAGTTTGGAACTCTGTATTG

upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G38300.1 (Glycine max), 3'ss of exon 8
gtattaaccactcctgctattttcttcattgtaaatgcattaaaaccccattccaatatttaatgcattacttcacccacactgacactcactggagtctgtcggtaggagtagaatttatttttgtgggatactctttgagatatctacttgagtactggaaaaaattaggctaaagtgttgacttttcttccagGTACACTGCAGAGAACTCTGTAAAATTTGGAGCTCCTCGAGATACTGATCACCCTGAACTCAGACAACCACTAGCATTGGACGTATGGGATTCTGTATTG
                                                                                          |  |    ||     || |  ||    ||   ||  | | |    |||  | || || | | |  |  |   |  || | | | ||    |||       || |||||| || ||||||||||||| |   |  || |||||||| ||||| |||||||||||||||||||||||||||||  |||| || ||||| |||||||||
------------------------------------------------------------------------------------------atagacaccttgtaataaggctatgtattggcttgctcgca----cttaaaaatttccagt-gttttttaccagcaact-gacaaacacattgtgaaccatttcagGTATACAGCAGAGAACTCTGAAGTTTGGGGGGCTCCTCGGGATACGGATCACCCTGAACTCAGACAACCACTAGCCATGGAAGTTTGGGACTCTGTATTG

upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G28410.1 (Glycine max), 3'ss of exon 8
gtattaaccactcctgctattttcttcattgtaaatgcattaaaaccccattccaatatttaatgcattacttcacccacactgacactcactggagtctgtcggtaggagtagaatttatttttgtgggatactctttgagatatctacttgagtactggaaaaaattaggctaaagtgttgacttttcttccagGTACACTGCAGAGAACTCTGTAAAATTTGGAGCTCCTCGAGATACTGATCACCCTGAACTCAGACAACCACTAGCATTGGACGTATGGGATTCTGTATTG
                                                                                                  |  | | ||    | |  ||||||   |||| || ||  |  |  ||    |||   |      | ||   |  ||||    || || | |     ||||| ||  | || || ||||| || ||||| ||||||||| |||| |||||||||||||| ||||| ||||| |   ||||  | ||||| ||  |||||
------------------------------------------------------------------------------------------------tacgtttgttatatatggtttttattcaagtggcatgcttgtaaacttactctcttttttttacctataataaactctaacaaattaacatgtggcttagGTATACATCTGAAAATTCTGTGAAGTTTGGGGCTCCTCGAAATACAGATCACCCTGAACTTAGACAGCCACTGGTCATGGAAATTTGGGAGTCCATATTG

upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G28400.2 (Glycine max), 3'ss of exon 10
gtattaaccactcctgctattttcttcattgtaaatgcattaaaaccccattccaatatttaatgcattacttcacccacactgacactcactggagtctgtcggtaggagtagaatttatttttgtgggatactctttgagatatctacttgagtactggaaaaaattaggctaaagtgttgacttttcttccagGTACACTGCAGAGAACTCTGTAAAATTTGGAGCTCCTCGAGATACTGATCACCCTGAACTCAGACAACCACTAGCATTGGACGTATGGGATTCTGTATTG
                                                                                            |  | | |||    |  |  || |  | | |     |  |     |  | ||   |||  |  |  |  | |  |  |   |   ||||||    |  ||  ||||| ||    || || ||  | || ||||   || |||   |||||||||||| |||||||||||||||||| ||  ||||  | ||||| ||| || ||
-------------------------------------------------------------------------------------------ttaaaatttgttaa-aatacaagcacatgtataataagagtgaaaataaaaattgttacccg--tgatatacactaacaatttggtgtgttgtgactgatt--agGTATACACTTGAAAATTCCATGAAGTTTGAGACTTCTCAGAATACTGATCACCTTGAACTCAGACAACCACTGGCTATGGAAATTTGGGAGTCTATAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatctacttgagtactggaaaaaattaggctaaagtgttgacttttcttccagGTACACTGCAGAGAACTCTGTAAAATTTGGAGCTCCTCGAGATACTGATCACCCTGAACTCAGACAACCACTAGCATTGGACGTATGGGATTCTGTATTG
                                     tgttgac  putative branch site (score: 3)
                                       ttgacttttcttcc  CT-rich tract
                    aaaaaatta  TA-rich tract