1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gggttgcttatcagttttggttgtggttgtgcttctacttgttttgttagcttataccataccataataattttacttgtaaacattttttttttgtcagATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG
species | Vitis vinifera |
transcript | Vv05s0020g01800.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTCTGTAAGAGATATGACTAGAACCTGGAAGAGAATTGATGAAGAG ATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAGEST: gi|30135882|gb|CB921220.1|CB921220
genomic: CCAAGTCTGTAAGAGATATGACTAGAACCTGGAAGAGAATTGATGAAGAGgtgggcttat ... tttttgtcagATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG
EST: CCAAGTCTGTAAGAGATATGACTAGAACCTGGAAGAGAATTGATGAAGAG ATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG
genomic: CCAAGTCTGTAAGAGATATGACTAGAACCTGGAAGAGAATTGATGAAGAGgtgggcttat ... tttttgtcagATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG
gttagcttataccataccataataattttacttgtaaacattttttttttgtcagATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG
cattttttttttgtc CT-rich tract
ataccataataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttgcttatcagttttggttgtggttgtgcttctacttgttttgttagcttataccataccataataattttacttgtaaacattttttttttgtcagATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - -tggttgt
- - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - -cttctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaca