Sequence
atgc intronic sequence ATGC exonic sequencegtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 3'ss of exon 10
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
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--------------------------------------gtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttactgaaaaaaccattcttcttgttagATGGTATGGTCGAGAGTGAAAACCCATGGCCATCATCCATCACCTCGAGCTGGTTGCTGCGGAGCTCTCTGTGGCACTAAATGGTATATCGCAGGGGGTG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G070553_T01 (Zea mays), 3'ss of exon 10
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
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------------------------gtaagtattgtcgtgttactttattggttt-----tgcttgttaacagattgctgaa--aaatttgatatct---ttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G10310.1 (Glycine max), 3'ss of exon 10
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggat-ttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
| | | || | | || |||| ||||||||| || |||||| | ||| || ||||| ||| | ||| || | || | || | ||||||| |||||||||||| || | | | ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||
---------gtgagctctcatatca--------gtgaaacttttttatttctccaa-gatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcagATGGCATGGTCAAGAATAAAAATACATGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGGGGTG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 8
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggat-ttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
| ||| | | | || |||| ||||||||| || ||||| | ||| || ||||| ||| | ||| || | || |||| | ||||||| |||||||||||| || | | ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||| ||||
------------gtgagctctctata--tcagtg--aaacttttttatttctccaa-aatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G02680.1 (Glycine max), 3'ss of exon 8
-----------------------gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttct--ataatg---atgaaaacttacatcttcatt--agttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
| ||| | | || | | | || ||| ||| |||||| | | || ||||| ||| |||| | ||||| |||| | || ||| | ||||||| ||||||| || | |||| | | | ||| ||||||||||||||||||||||| || | ||||| |||||||||||||| |||| ||||
gtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttct-tcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCTGGTTGTTGTGGTGTCCTTTGTGGTACTAAATGGTATATCACAGGTGGTG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G38020.1 (Glycine max), 3'ss of exon 9
-----------------------gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttc--tataatgatgaaaacttacatcttcattagttgattt-tgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
| ||| | | || || | | | || ||| ||| ||||| || | || | | || | | | || |||| | | | || ||| | ||||||| ||||||| || | |||| | | |||||||||||||||||||||||||| || | ||||| |||||||||||||| | |||||||
gtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttct-tcagATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G18590.2 (Arabidopsis thaliana), 3'ss of exon 10
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
| |||||| | | ||| | | ||| || ||| |||| | | || | | | | | ||||| ||||||||||||| |||| | | || |||||||| ||||| ||| ||||||||||| | || || ||||||||||||||| | || || |
---------------------gtaatacttattgctataatgttttttatttatt----tggtttcttga-----cattgaacatctcttatctcttggtgtca--tcaagATGGTATGGTCAAGAATAAAGATAAGAGGATTTCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAACCGGAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
tttttgtctc CT-rich tract
attttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG