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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcagCAACTATTTTGGATAAGAACCGCAGGTCCATCACTGTTGACCCTGAAGGAAGAAAGGGGAATGCATTTGATTATGGCTCAGGCTTCGTGAACCCCACAAG

Basic information

species Vitis vinifera
transcript Vv04s0044g01970.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G36000.1 (Glycine max), 3'ss of exon 10
gtaaaatttccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcagCAACTATTTTGGAT-AAGAACCGCAGGTCCATCA----CTGTTGACCCTGA---AGGAAGAAAGGGGAATGCATTTGATTATGGCTCAGGC-TTCGTGAACCCCACAAG--------
                 ||  |    |  ||| |   |    ||||| | ||  |  |  | ||||   | |||  | | |       |  || ||  ||||||      ||| ||||| | |    |     || |||     | | || ||||     | |    |   |||| ||   |||| ||   |   | || ||  ||      |         
-----------------cagtaagttcaatgtgcagcaacaattttggataagcaccaccaaccca---ttagagcagatcctgatagaagaagggctaatgcatttg--attatggatcagGGTTTGTGAACCCCTCAAGAGTTCTGGATCCTGGTCTTGTATATGATTCGAATCCAGAAGATTTTGTTGCGTTCCTTTGTTCACTTGGTTATGATGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcagCAACTATTTTGGATAAGAACCGCAGGTCCATCACTGTTGACCCTGAAGGAAGAAAGGGGAATGCATTTGATTATGGCTCAGGCTTCGTGAACCCCACAAG
                            aactgac  putative branch site (score: 2)
                     agaaaaaaa  TA-rich tract