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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttctctatcttggtctggtgaaaaaatttggtcaaatgggtgtttaatattcatcttagattttgcatctacattgttttttttttttgggcctttcagGTTTAAAAGGATCAGATGTTAGCATTGTTGTGATTTTGGGAATTGTAGCAGTTCGGTATATCTTTTTGCCTCTGTTGGGTGTTGTTGTTGTCAAAGCCGC

Basic information

species Vitis vinifera
transcript Vv04s0044g01850.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110725478|gb|EE102023.1|EE102023
EST:     GGCAGCCATCCCATCGACAACCCTGATAATGGGAGCAAACCTCCTTTCTG                         GTTTAAAAGGATCAGATGTTAGTATTGTTGTGATTTTGGGAATTGTAGCAA
genomic: GGCAGCCATCCCATCTACAACCCTGATAATGGGAGCAAACCTCCTTTCTGgtgatttctc ... ggcctttcagGTTTAAAAGGATCAGATGTTAGCATTGTTGTGATTTTGGGAATTGTAGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatattcatcttagattttgcatctacattgttttttttttttgggcctttcagGTTTAAAAGGATCAGATGTTAGCATTGTTGTGATTTTGGGAATTGTAGCAGTTCGGTATATCTTTTTGCCTCTGTTGGGTGTTGTTGTTGTCAAAGCCGC
 gtttaat  putative branch site (score: 4)
                                ttttttttttttgggc  putative PPT
                      atctacattgtttttt  TA-rich tract