Sequence
atgc intronic sequence ATGC exonic sequence...gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G078458_T04 (Zea mays), 3'ss of exon 10
-------gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
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gaggtgaaaagatggttt-tgtttttttgcatttcaatgtttaatagtttaa---caactag---aataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G39970.1 (Glycine max), 3'ss of exon 12
--gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
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cagagtgaatcttctattcagttgaaggttgaattataagttactttgaagc-ttatttcaagtactaataattgtttcct-tatttttgcacttggtgcagGAACTTCTATATCTGTATGGTTTTGTCATTGATGATAACACAGATGACTATCTCATG
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G01920.2 (Arabidopsis thaliana), 3'ss of exon 10
------------gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
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gtaagatgttttgcagctatcttgtacaactatataacttgtctcttggtaaaa-aatcacatctagc-------cctttgtttgagtgatgtgccttcttgctgaatgcagGAGCTTCTTTACCTGTATGGCTTTGTGATAGATAACAACCCAGATGATTATCTCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542617|gb|CF510849.1|CF510849EST: GCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAG GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTAT
genomic: GCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtactttcta ... tttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
ctttgat putative branch site (score: 5)
tttcctttcctttgat CT-rich tract
aaaaaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -tggctta
- - - - - - taccatt
- - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - -aggaaac
- - - - - - - - - - - - - - - - - - - - - tgagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa