Sequence
atgc intronic sequence ATGC exonic sequencegtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G374574_T02 (Zea mays), 3'ss of exon 10
-----------gtaatacaaattt-gagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaat-ttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
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gtatgtacagagaagctctatttccaagtgctttgctttca--ttttgttttgctttgttttatgtattaattagttgtttgta-ttcacttt-tcacgacttaatgtgttgcaattggc--cagGAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACATTGCAAGAACTGCAAGTTCTTGTTGAACGAAAGCAGTTCCTTGAATCCA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 10
gtaatacaaatttgagttctatattgtcaa-attttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
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-----------gtatgttgtgcaatattgatgttttaaccattttcatttgtattgttaatctgatg-gtcaatttcttctagtctatgtacctaaccttcactttgtggcagGATCTTGATTTGCATGACATTCTGTCCATTGATGCTGAGCTTGGGAAGACTTTGCAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 10
gtaatacaaatttgagttctatattgtcaa-attttacctgcctctgtttaacatatttccctgtcatgggaggttcatt-tggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
| ||| | | | | | ||||| | | ||| || | | | | |||| || ||| | ||||| | || | | | ||||||||| |||||||||||||| || | |||||||||| |||||||||| ||| ||||| | | | |||||||||||||||||| ||| | || |
-----------gtatgttgtgcaatattgatgttttaaccattttcattttttat-tgttaatctgatggtcaatttattctagtcaatgaacctaaccttcactttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTACAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 10
gtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
|| || | |||| || || || | | || | | | | || | || | || | || | | | |||| |||||||| || |||||||||||||| || | ||||||||||||||||||| | ||||||||| | | | ||||||||| |||||| | | | || |
------------------gtaagttatgaaatgttga-tgtcttgtctgatttcatgtgtatcttaaggttgatttttagtctctatatatttagcctttgatatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAATGTTTTATAGAATCTA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G11490.1 (Glycine max), 3'ss of exon 10
gtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
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------------------gtaagttatgaaatgttga-tgtcttatctgatttgatgtgcatcttaaggttgatttttagtatgtatatatttaacccttgatatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGAAAACATTATATACAATCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717510|gb|FC067870.1|FC067870EST: TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAA GATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
genomic: TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaa ... tcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
EST:
gi|110686202|gb|EE063591.1|EE063591EST: TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAA GATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
genomic: TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaa ... tcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
tcccttgc CT-rich tract
tcaaaatttcaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC