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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccttatatgcttgaattaattacttttgtataaacaataacaagtagaacttcatcaccaattttttttgggcttgcagGTGGCATGCTATTCGCCGCCCAAAGCTCTGGCAGGTTGAGCAATCCTCACTACATAATAAG

Basic information

species Vitis vinifera
transcript Vv04s0023g03780.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03780.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G23360.1 (Glycine max), 3'ss of exon 10
gtccttatatgcttgaattaattacttttgtat-aaacaataacaagtagaact-tcatcaccaattttttttgggcttgcagGTGGCATGCTATTCGCCGCCCAAAGCTCTGGCAGGTTGAGCAATCCTCACTACATAATAAG
||    |  |  ||  | | | | |||| || | | | ||    | ||    |  | ||    || | | ||     || |||||||||||| ||||| || |||||||||||||| |||||| || | ||| || | ||    
gttagcacttatttccactcagt-ctttggtgtgagaaaactttatgtttctcagttatatttaaatctgttcacttttacagGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATTATACAAG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtataaacaataacaagtagaacttcatcaccaattttttttgggcttgcagGTGGCATGCTATTCGCCGCCCAAAGCTCTGGCAGGTTGAGCAATCCTCACTACATAATAAG
          caataac  putative branch site (score: 2)
                                     ttttttttg  putative PPT
     ataaacaataacaa  TA-rich tract