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...ttcatcagtgtattgaaccaccatttaaagtattagttttcacaaatatgtattatcatatttcattatttcactgaaaccttcttttgaatattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCGAGGATGTCCCCAATCTCCTTTAAGCCCTGAAG
species | Vitis vinifera |
transcript | Vv04s0023g03020.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|22011128|gb|BQ796162.1|BQ796162
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|30126977|gb|CB912316.1|CB912316
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGACCTGCEST: gi|33403028|gb|CF208655.1|CF208655
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|46918655|gb|CN547984.1|CN547984
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|110705809|gb|EE083079.1|EE083079
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|110375447|gb|EC940435.1|EC940435
genomic: CTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|71872346|gb|DT021401.1|DT021401
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCEST: gi|22012959|gb|BQ797993.1|BQ797993
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
EST: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACA TGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
genomic: CTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACAgtgagttcta ... atattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGC
atatgtattatcatatttcattatttcactgaaaccttcttttgaatattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCGAGGATGTCCCCAATCTCCTTTAAGCCCTGAAG
tattttc CT-rich tract
tattatcatatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatcagtgtattgaaccaccatttaaagtattagttttcacaaatatgtattatcatatttcattatttcactgaaaccttcttttgaatattttcagTGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCGAGGATGTCCCCAATCTCCTTTAAGCCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - accacca
- - - - - - - - - - - - - - - - - - - - cacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa