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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatttcgttctcagaaatctaacgtcaaattttgttgtgtgatatacttagaggaacgaatttgttagtggattacaaatgtatgcttatgtcactgtaatgaccagATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCA

Basic information

species Vitis vinifera
transcript Vv04s0023g01030.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G06650.2 (Glycine max), 3'ss of exon 5
gtaaggatttcgttctcagaaatctaa-cgtcaaattttgttgtgtgatatacttagaggaacgaatttgttagtggattacaaatgtatgcttatgtcactgtaatgaccagATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCA
||| |||||||   ||   ||||  || | ||| || |  || ||  ||| |   |||     | ||    |||||  ||    |  | |   ||| ||| |||||| || |||||||  ||||||| |||||||   ||||||| ||    ||||||||||| || |||||||||||||| |||||| | |||||||||||||| |||||  
gtagggatttctcacttgcaaattgaatcttcacatctaattctgctataga---agatctgtgtatcaaatagtgattttattacttttatatatttca-tgtaat-actagATTTCAAGGAGGCCAAGGATTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTG

upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 6
gtaaggatttcgttctcagaaatctaa-cgtcaaattttgttgtgtgatatacttagaggaacgaatttgttagtggattacaaatgtatgcttatgtcactgtaatgaccagATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCA
||| |||||||   ||   ||||  || | ||| || |  || ||  |||||   |||     | ||    |||||  ||    |  | |   ||| ||| |||||| |  |||||||  ||||||| ||||||||  ||||||| ||    ||||||||||| || |||||||||||| | |||||||  |||||||||||||| |||||  
gtagggatttctcacttgcaaattgaatcttcacatctaattctgctatataga-agatctgtgcatcaaatagtgattttattacttttatatatttca-tgtaataat-agATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaacgaatttgttagtggattacaaatgtatgcttatgtcactgtaatgaccagATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCA
      aatttgtta  TA-rich tract