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...atgcattttgcttcatttttcacttttcttagatttagaagaagcatttctattcattttcatgacttccattcaaatctcaatttgcttgtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGATGATGGGTATCCAGGCAACCTATATAGATGACAATCGTTTGTGCTGCAGT
species | Vitis vinifera |
transcript | Vv04s0008g06480.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAG TGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGATEST: gi|351029617|gb|FQ427457.1|FQ427457
genomic: TTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAGgttagtttaa ... gtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGAT
EST: TCACTTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAG TGCATCACTTATGACTTACGCTCATGATGATATATCTGTGGGGTCGTGGATEST: gi|110424757|gb|EC991128.1|EC991128
genomic: TCACTTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAGgttagtttaa ... gtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGAT
EST: TCACTTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAG TGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGATEST: gi|30131948|gb|CB917287.1|CB917287
genomic: TCACTTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAGgttagtttaa ... gtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGAT
EST: TTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAG TGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGAT
genomic: TTATTATACTCTCCAAAAATTTGGTCCAGTATGTTAACATAAACAGgttagtttaa ... gtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGAT
atttctattcattttcatgacttccattcaaatctcaatttgcttgtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGATGATGGGTATCCAGGCAACCTATATAGATGACAATCGTTTGTGCTGCAGT
cttgttttt CT-rich tract
tattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcattttgcttcatttttcacttttcttagatttagaagaagcatttctattcattttcatgacttccattcaaatctcaatttgcttgtttttgcagTGCATCGCTTATGACTTACGCTCATGATGATATATCTGTGGGGTCATGGATGATGGGTATCCAGGCAACCTATATAGATGACAATCGTTTGTGCTGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - tgcttca
- - - - - - - - - - - - - - - - - - agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattca