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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttatatcatccccttctaggttatgttgttttaatacacttattgcttattttcatccatatccaagaaactacaaacttgttttctagGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTTCTTAGAG

Basic information

species Vitis vinifera
transcript Vv04s0008g02740.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G24420.1 (Glycine max), 3'ss of exon 10
gtaagttc--ttatatcatccccttctaggttatgttgttttaatacacttattgcttat-tttcatccatatccaagaaactacaaacttgttttctagGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTTCTTAGAG
|| |||||   ||||   |  | || |      ||||     | ||  || | || || | ||| |   | |   |  |   | | ||     |||  |||| |||||||||||||| |||||||| ||||| | | |||||||||||||||| ||||
gtgagttcagctataaacttacattttttcccctgttccaaaattatgct-actgattgtgttttagatagaatgataatttttctaaaaatattttcagGTTGATGCATTTCCAGGTGATATTGTAATATTTGGAAGGGTTCTTAATCTTCTAAGAG

upper sequence: Vv04s0008g02740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G20110.1 (Glycine max), 3'ss of exon 11
gtaagttcttatatcatccccttctaggttatgttgttttaa--tacacttattgcttattttcatccatatccaagaaactac---aaacttgttttctagGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTTCTTAGAG
|| |||||   ||| | |      |   ||    ||||  ||  ||  ||  |    |||||  | | |||       || |     |||  | ||||| |||| ||||||||||| || |||||||| ||||| | | |||||||||||||||| ||||
gtgagttcagctataaacttacattt--tttccctgttccaaattatgctactataatatttggaacgatagaacgataatttttctaaaaatattttc-agGTTGATGCATTTCCTGGTGATATTGTAATATTTGGAAGGGTTCTTAATCTTCTAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161711504|gb|FC058706.1|FC058706
EST:     TACAGGAAAAGATGAAACTCAATAAAAAAGAAGTTAAACGCTTTAATCCC                         GTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTT
genomic: TACAGGAAAAGATGAAACTCAATAAAAAAGAAGTTAAACGCTTTAATCCCgtaagttctt ... tgttttctagGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacacttattgcttattttcatccatatccaagaaactacaaacttgttttctagGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTTCTTAGAG
                                           cttgttttct  CT-rich tract
     ttattgcttatttt  TA-rich tract