Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   
21  
 5'  3'   
22  
 5'  3'   
23  
 5'  3'   
24  
 5'  3'   
25  
 5'  3'   
26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G05900.3 (Glycine max), 3'ss of exon 10
gtatg---tgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT
||||| |||||| ||| | ||| || |||| || | | | ||| | | || | | | | || | | ||| | ||| || |||||||| || | || |||||||| || ||||||||||||||||| ||||| || ||| |||||||
gtatgtactgcattatcctttttcagttatttttaaaaacaatggcatgt----ggtcttccattttccttatttatgaagctccttttaaacttgtttgagcttggtagGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatgtgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT
|| | || | | | | | || | |||| |||| | || || || | || || |||||| |||||| |||||||| || || || || ||| | || ||||||||||||||||||||||| || ||||| |||||
------------------gttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttctt--ttaaagaagatcattttcttatct--tagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT
                    tattaat  putative branch site (score: 2)
 tttttatctcct  putative PPT
 tttctcttattaatt  TA-rich tract