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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G05900.3 (Glycine max), 3'ss of exon 10
gtatg---tgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT
|||||   ||||||   |||  |    ||| || ||||    ||   | |    |  |||  |    | || | |    |  | ||   |  |   |||     |  ||| || |||||||| ||  | || |||||||| || ||||||||||||||||| ||||| || ||| |||||||
gtatgtactgcattatcctttttcagttatttttaaaaacaatggcatgt----ggtcttccattttccttatttatgaagctccttttaaacttgtttgagcttggtagGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatgtgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT
                   ||   | ||      | |  | |  |  || |    ||||     |||| | || ||  ||     |   ||  || ||||||  |||||| |||||||| || || || || ||| | || ||||||||||||||||||||||| || ||||| |||||
------------------gttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttctt--ttaaagaagatcattttcttatct--tagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTT
                    tattaat  putative branch site (score: 2)
                                         tttttatctcct  putative PPT
             tttctcttattaatt  TA-rich tract