1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaacttcaatccttcatcccttttatattccactgactcccccttttctccaccttattctacttgctccaaatgttaaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGATGACTACCAGGGGATTCTCCGAGAAGGAATTCATAGCAACTGCAGATTT
species | Vitis vinifera |
transcript | Vv04s0008g00770.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTAEST: gi|110361720|gb|EC925214.1|EC925214
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG GCGACAAGAGTGCCCTGGTGCCTGGTGGCATTCGCATCGGATCACCTGCGAEST: gi|110390273|gb|EC955175.1|EC955175
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTAEST: gi|110384184|gb|EC948603.1|EC948603
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTAEST: gi|110385950|gb|EC950512.1|EC950512
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTA
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
ctgactcccccttttctccaccttattctacttgctccaaatgttaaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGATGACTACCAGGGGATTCTCCGAGAAGGAATTCATAGCAACTGCAGATTT
cactgac putative branch site (score: 2)
aaatgttaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttcaatccttcatcccttttatattccactgactcccccttttctccaccttattctacttgctccaaatgttaaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGATGACTACCAGGGGATTCTCCGAGAAGGAATTCATAGCAACTGCAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT