Sequence
atgc intronic sequence ATGC exonic sequence...cttctgatgtctattagacctctctttatttctacttttgtaaatgggtttcttttgttaccgaatgacaattcctttttcatttttcgtttgtctgtagATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g54020.1 (Oryza sativa), 3'ss of exon 10
--cttctgatgtctattagacctctctttatttctacttttgtaaatgggtttcttttgttaccgaatgacaattcctttttcatttttcgtttgtctgtagATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGAT
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aacttgcagagctgattccaggcatctatattt-tatactttctgctcagtgtgctgtatatctctgccatactgacctttgttctgtttattcatgt-tagATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGAT
upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G177970_T01 (Zea mays), 3'ss of exon 10
-------------------cttctgatgtctattagacc-tctctttat-ttctacttttgtaaatgggtttcttttgttaccgaatgacaattcctttttcat-------------ttttcgtttgtctgtagATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGAT
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gtgattgacagaactgccagtttagatatgcatttaattattgagttatgttctgagccgattcatat-tttttctggttacctgattactgtcctctatacatgtaatgtgatgacttctgttttggtgatagATGTCCAAGTCTGCTCCTTCAGACCAGTCTCGTATTAACCTTCTTGACCCAAAAGAT
upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G25840.2 (Arabidopsis thaliana), 3'ss of exon 8
-cttctgatgt--ctattagacctctctttatttctacttttgtaaatgggtttcttttgttaccgaatgacaattcctttttcatttttcgtttgtctgtagATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGAT
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tgaactaatccaatttttgggcttacttattgttgttttcaaatgatcaagaggaattttatacttatcgctaaggtcttactgtcatgtaatct---tgtagATGTCCAAGTCTGCCCCTTCTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggtttcttttgttaccgaatgacaattcctttttcatttttcgtttgtctgtagATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGAT
ttcctttttcattttt CT-rich tract
tttttcattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttctgatgtctattagacctctctttatttctacttttgtaaatgggtttcttttgttaccgaatgacaattcctttttcatttttcgtttgtctgtagATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - tgatgtc
- - - - - - - - - cctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgaatg