1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttttcagcttttcttttcctattgggttcatggttttcagcattcctggtttatactttacgactttgatctgacaaaattctgaatttgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAGAATAGAATAGATTAGAAGGCAATTTGTGCTGTTTTCTTCTCAGTTTTA
species | Vitis vinifera |
transcript | Vv03s0097g00590.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAEST: gi|110428685|gb|EC995164.1|EC995164
genomic: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
EST: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAEST: gi|110422278|gb|EC988596.1|EC988596
genomic: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
EST: AGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAEST: gi|30128711|gb|CB914050.1|CB914050
genomic: AGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
EST: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAEST: gi|110376048|gb|EC941087.1|EC941087
genomic: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
EST: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAEST: gi|110397176|gb|EC962900.1|EC962900
genomic: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
EST: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAEST: gi|352765105|gb|FQ465802.1|FQ465802
genomic: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
EST: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAG ATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
genomic: TTCTTGAAGAGCGATTGAATATGGGTCTTAATTTCATTCTTTCTGCAGAGgtgagaacca ... tgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGA
tcctggtttatactttacgactttgatctgacaaaattctgaatttgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAGAATAGAATAGATTAGAAGGCAATTTGTGCTGTTTTCTTCTCAGTTTTA
atctgac putative branch site (score: 3)
tttgtctt putative PPT
aaaattctgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttcagcttttcttttcctattgggttcatggttttcagcattcctggtttatactttacgactttgatctgacaaaattctgaatttgtcttgcagATAGATCACCGGAAGAAAGACTACAAATTTGGGTTTGGGCTGACAGTAGGAGAATAGAATAGATTAGAAGGCAATTTGTGCTGTTTTCTTCTCAGTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - ttcagct
- - - - - - - - - -cctattg
- - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa