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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacctccttacttggacagaaccaggttttattttttattttatttaatttatttatttatttattttcaattaatattgtcacattctctattttgttatcatctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTC

Basic information

species Vitis vinifera
transcript Vv03s0038g04470.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G04460.1 (Glycine max), 3'ss of exon 9
gtaagacctccttacttggacagaaccaggttttattttttattttatttaatttatttatttatttattttcaattaatattgtcacattctctattttgttatcatctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTC
||||||  |   |   |||   |         |||||  ||    |   |  |  |     | ||||        || ||  ||| || || |  | | ||| |     ||   |||| | ||||| ||||| ||||||||||| |||||||| || |||||||||||||| ||||| |||||| |||| ||||| || ||||| ||| ||||||| |
gtaagatgt---tgtatggctgg---------ttattgcttgaactgggtggtggagg-gctgatttgcacctttttcattgtgtaactttattgactatgtcacttctttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGATATAGCTTCTCCAAAAGTGACGAAGAGCTACTCACACCTGAGGTTGACAC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G12260.1 (Glycine max), 3'ss of exon 9
gtaagacctcct-tacttggacagaaccaggttttattttttattttatttaatttatttat---ttatttattttcaattaatattgtcacattc--tctattttgttatcatctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTC
||||||  |  | |   | |  |   |  |   |   |       | |||| |||  ||| |   |  |  || | |  ||   |||||   |||   |  | | ||  |     ||   |||| | ||||| ||||| ||||||||||| |||||||| || |||||||||||||| ||||| ||||||  ||  ||||| || ||||| ||| ||||||| |
gtaagatgttgtatggcttgttatcgcttgaactgggtggagggctgatttgattcctttgtacctcttcaatgtccttttttcattgtgtgatttaattgactgtgccacttctttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATATAGCTTCTCCAAAAGCGATGAAGAGCTACTCACACCTGAGGTTGACAC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G01220.1 (Glycine max), 3'ss of exon 9
gtaagacctccttacttggacagaaccaggttttattttttattttatttaatttatttatttatttattttcaattaatattgtcacattctctattttgttatcatctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTC
    |  || | |  |||||  ||||||  ||| ||   ||  |   |||   | | |  | |||| ||  |         || ||| |||    ||||| ||| | |     | ||| | ||||| |||||||||||||| || |||||||| || ||||| ||||||||  | || ||||||  ||  |||||||||||||| ||   |||||| |
----gtacttcatttttggatggaaccaaatttaatcccttcataccttttcctgaatgttctattcatcat---------ttatcatattta--attttattacctttacctaacagGTAAAAGGCAGTGATACATCCACTGCTGAATCAGGGTCAGAAGCCGAAGATATATCCTCTCCAAAAGCGATGAAGAGTTATTCACACCTTACGTTGACCC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagacctccttacttggacagaaccaggttttattttttattttatttaatttatttatttatttattttcaattaatattgtcacattctctattttgttatcatctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTC
                            |    || || |||  |  | ||| |  |  || | || | ||     | |   | |      ||  | | || | |    |  |   |||| || || ||||| |||||||| ||||| ||||||||||| ||||||||||| | ||| || ||    |  |||||||  || || || || ||||| |
----------------------------gtacgtagttattaaatcctataactagtcaatct-ttaacttgtggctgaccatattgtgc-ctaaactctgctctgtcataaacatagATAAAGGGAAGTGACACATCCACTGCAGAGTCAGGATCTGACGCTGAAGATATCGGTTCTCCGAAGGCTATAAAGAGTTTCTCTCATCTCCGCTTGACAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351047103|gb|FQ454713.1|FQ454713
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|351015523|gb|FQ447352.1|FQ447352
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351015523|gb|FQ447352.1|FQ447352
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351026236|gb|FQ428248.1|FQ428248
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351026236|gb|FQ428248.1|FQ428248
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349822502|gb|FQ412766.1|FQ412766
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349822502|gb|FQ412766.1|FQ412766
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351014493|gb|FQ437495.1|FQ437495
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351014493|gb|FQ437495.1|FQ437495
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|30128724|gb|CB914063.1|CB914063
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         ATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGAT
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGAT
EST: gi|351056783|gb|FQ443410.1|FQ443410
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|351026103|gb|FQ428115.1|FQ428115
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351026103|gb|FQ428115.1|FQ428115
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|30296909|gb|CB973703.1|CB973703
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|30296909|gb|CB973703.1|CB973703
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351027625|gb|FQ446789.1|FQ446789
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351027625|gb|FQ446789.1|FQ446789
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349826667|gb|FQ418758.1|FQ418758
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349826667|gb|FQ418758.1|FQ418758
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351055947|gb|FQ453408.1|FQ453408
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351055947|gb|FQ453408.1|FQ453408
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351044521|gb|FQ443052.1|FQ443052
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|349828849|gb|FQ419182.1|FQ419182
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349828849|gb|FQ419182.1|FQ419182
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351039650|gb|FQ461517.1|FQ461517
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|351056747|gb|FQ443374.1|FQ443374
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|351040873|gb|FQ438417.1|FQ438417
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351040873|gb|FQ438417.1|FQ438417
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|87584671|gb|DY473747.1|DY473747
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|349819344|gb|FQ412238.1|FQ412238
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349819344|gb|FQ412238.1|FQ412238
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349817039|gb|FQ399786.1|FQ399786
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|349817039|gb|FQ399786.1|FQ399786
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|30296834|gb|CB973628.1|CB973628
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGTTAAGCCCCAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|30296834|gb|CB973628.1|CB973628
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGTTAAGCCCCAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|32270608|gb|CD719767.1|CD719767
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|32270608|gb|CD719767.1|CD719767
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351034834|gb|FQ458191.1|FQ458191
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAG                       
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAAT---Ggtaagacctc ... ctttaagc
EST: gi|351024179|gb|FQ423602.1|FQ423602
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351024179|gb|FQ423602.1|FQ423602
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|30299808|gb|CB976602.1|CB976602
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         ATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGAT
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGAT
EST: gi|351021812|gb|FQ437197.1|FQ437197
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351021812|gb|FQ437197.1|FQ437197
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351054162|gb|FQ450244.1|FQ450244
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351054162|gb|FQ450244.1|FQ450244
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351038002|gb|FQ460744.1|FQ460744
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-
EST: gi|351038002|gb|FQ460744.1|FQ460744
EST:     TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATG                         C
genomic: TAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctc ... ctttaagcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattttcaattaatattgtcacattctctattttgttatcatctttaagcagATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTC
          aattaat  putative branch site (score: 3)
                                         tcatcttt  putative PPT
     ttttcaattaatattg  TA-rich tract