1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gaagttgctagtagagttgtcattgatgttgatatcacaacagaatatctaattttctttttctttttttataattatttttttccttttcctattgcagGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATCATAACAATACTTACTGAAACATTTTCCATGATTGCATCTCATGCTCACC
species | Vitis vinifera |
transcript | Vv03s0038g04090.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTACTCATTATACAG GTTGCAACTGATATATACAAAA-TTGCAGACAGGCC-TTTTGGCATCCATCEST: gi|110429473|gb|EC995966.1|EC995966
genomic: ACTACTCATTATACAGgtactctcct ... cctattgcagGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATC
EST: TTCAAGAATGAAGAGTCATATAGCTATGCAACTACTCATTATACAG GTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATCEST: gi|161706797|gb|FC055507.1|FC055507
genomic: TTCAAGAATGAAGAGTCATATAGCTATGCAACTACTCATTATACAGgtactctcct ... cctattgcagGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATC
EST: TGGTTTCAAGAATGAAGAGTCATATAGCTATGCAACTACTCATTATACAG GTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATC
genomic: TGGTTTCAAGAATGAAGAGTCATATAGCTATGCAACTACTCATTATACAGgtactctcct ... cctattgcagGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATC
tatctaattttctttttctttttttataattatttttttccttttcctattgcagGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATCATAACAATACTTACTGAAACATTTTCCATGATTGCATCTCATGCTCACC
atctaat putative branch site (score: 3)
ttttctttttcttttt CT-rich tract
aattttctttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagttgctagtagagttgtcattgatgttgatatcacaacagaatatctaattttctttttctttttttataattatttttttccttttcctattgcagGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATCATAACAATACTTACTGAAACATTTTCCATGATTGCATCTCATGCTCACC
- - ttgctag
- - - - - - - - - - - - - - - - - - - aacagaa