1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcaatcagaaatggaaacaacaatatctgattgtccatattttctcctgaacaatgtttgctaccagaactctattaacatctctgagtcctccttgcagGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAACAAGGGGCTCAGCCCTATATTCCTGAGAATGAGCGTTCTGGAATGATAA
species | Vitis vinifera |
transcript | Vv02s0087g00690.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGATTATAATGCCATCAGATGCTAGTTGTGAAGACATTGAG GTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAAEST: gi|71887855|gb|DT036910.1|DT036910
genomic: GTTGAGATTATAATGCCATCAGATGCTAGTTGTGAAGACATTGAGgttagctttt ... ctccttgcagGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAA
EST: TGCCATCAGATGCTAGTTGTGAAGACATTGAG GTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAA
genomic: TGCCATCAGATGCTAGTTGTGAAGACATTGAGgttagctttt ... ctccttgcagGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAA
cctgaacaatgtttgctaccagaactctattaacatctctgagtcctccttgcagGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAACAAGGGGCTCAGCCCTATATTCCTGAGAATGAGCGTTCTGGAATGATAA
tattaac putative branch site (score: 1)
tcctccttgc putative PPT
tattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatcagaaatggaaacaacaatatctgattgtccatattttctcctgaacaatgtttgctaccagaactctattaacatctctgagtcctccttgcagGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAACAAGGGGCTCAGCCCTATATTCCTGAGAATGAGCGTTCTGGAATGATAA
- aatcaga
- - - - - - ggaaaca
- - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctct