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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacctaggaagattccttgttttgcagagtagcaatgaggttaaaattcttgacattttgttgattcaataaacaaaaatctcaaggtttctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGTAAAGTTACTGGGAAAGGAATCGGGTTGTGTTTTCAGGAAGTGCAAAGAG

Basic information

species Vitis vinifera
transcript Vv02s0025g04710.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768761|gb|FQ467973.1|FQ467973
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|32247639|gb|CD713458.1|CD713458
EST:     CANAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATA
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATA
EST: gi|87585292|gb|DY474069.1|DY474069
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTTGTGGTAACATG
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAAC-TTTGTGGTAACATG
EST: gi|34550705|gb|CF518923.1|CF518923
EST:     CAAAGCCACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|110372909|gb|EC937106.1|EC937106
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|83276835|gb|DV940843.1|DV940843
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|110361871|gb|EC925373.1|EC925373
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|110373561|gb|EC937809.1|EC937809
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|351040093|gb|FQ425179.1|FQ425179
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|51989797|gb|CV179252.1|CV179252
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|352778219|gb|FQ465529.1|FQ465529
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
EST: gi|110375639|gb|EC940647.1|EC940647
EST:     CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAG                         GATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT
genomic: CAAAGACACGCTTGATTACATTGCCTGAAGGAAGTGAAGCTTGAGTGCAGgtacatatac ... ctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttgacattttgttgattcaataaacaaaaatctcaaggtttctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGTAAAGTTACTGGGAAAGGAATCGGGTTGTGTTTTCAGGAAGTGCAAAGAG
                                          tttctc  CT-rich tract
                  attcaataaacaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacctaggaagattccttgttttgcagagtagcaatgaggttaaaattcttgacattttgttgattcaataaacaaaaatctcaaggtttctcaatgcagGATCGACCTATGTGGAAGGACCTACTACTACATAACTTTGTGGTAACATGTAAAGTTACTGGGAAAGGAATCGGGTTGTGTTTTCAGGAAGTGCAAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - -aggaaga
- - - - - - ttccttg
- - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - caatgag
- - - - - - - - - - - - - - - - - - - - - aaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa