Sequence
atgc intronic sequence ATGC exonic sequencegtaagacagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcatttgccccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g48910.2 (Oryza sativa), 3'ss of exon 10
----------------------------------------------gtaagacagctaatgc-attttttttcttctcctcgaatcagtgttcaatatagtaattggtcatttgcc----------ccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
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gtaagaatgaaaaactcactgtttaatacttgttactttattgtttgagaaatgcttgttattattttctgaaaatcacttgacattttatttcatgtaaaagtagcatgtttgacaagtgtatgttttgtctcagGATGTCAAACTCTTGGTTGAAGACATTGGAGAACTCAAGCCAACAATTTTCTGCGCTGTTCCACGTGTACTAGACAGAATTTATGGAG
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G152127_T01 (Zea mays), 3'ss of exon 10
-----------------gtaagacagctaatgcattttttttcttctcctcgaat-cagtgttcaatatagtaatt-ggtcatttgcc--ccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
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tacgtgtctcctagtcgttatctcaacttaacttacctgaccctacattccaactaccttttttattagcgcaatttgatcaataagcattctgctccagGATGTCAAACTCTTGGTTGAAGACATTGGAGAACTCAAACCAACAGTTTTTTGTGCTGTTCCACGTGTTCTAGACAGAATTTATGGAG
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------gtaagacagctaatgcatttt--------ttttcttctcctcgaatcagtgttcaatatagtaattgg----------tcatttgcccca--atttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
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gtaagtagtatatgtatatctgtcattacgaaaaatgaacatttgatgtaataggatttgtttgattcgaccccgccccccctcccccccggcaaaagttgaacttcggatttggattatgaccatcatttactcaatggctgtagGATGTCAAATTGTTAATTGATGATGTTGGGGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAG
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G43470.4 (Glycine max), 3'ss of exon 10
----------gtaagacagct----------aatgcattttttttcttctcctcgaa-tcagtgttcaatatagtaattggtcatttgcccca--atttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
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gtgagtatatgtagtatatctgtcattacgaaatgaacatttgatgtaataattgaactttggatttggaata-tgatca-tcatttactcaatggctgtagGATGTCAAATTGTTAATTGAAGATGTTGGCGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAG
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G11030.1 (Arabidopsis thaliana), 3'ss of exon 10
----gta-agacagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcattt----gccccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
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gtgagtggatacagctcaaatctgaccttcctactagtt--attaaattttaatatatgcattatatatttctatactatgtccttagGATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351028751|gb|FQ433181.1|FQ433181EST: TTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGG GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCAACTATTTTC
genomic: TTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaagacagc ... ccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttctcctcgaatcagtgttcaatatagtaattggtcatttgccccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
tttgcccc CT-rich tract
ttcaatatagtaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcatttgccccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT