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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttggcttatcttctaagtgattctatgttcaaggagtccaagtatggctcttgaactttgctcaaaagggatattataatgttaaattgcttttggcctacaaaatctgaaagaggggcttgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAAAGCCAAGGGGAACACTTACAATAGATACTCCACAATTGTGACTAACAA

Basic information

species Vitis vinifera
transcript Vv02s0025g01380.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409699|gb|CX017951.1|CX017951
EST:     TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|56409333|gb|CX017585.1|CX017585
EST:     TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|110382139|gb|EC938589.1|EC938589
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|110379229|gb|EC944411.1|EC944411
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|37184191|gb|CF603545.1|CF603545
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|33405349|gb|CF210976.1|CF210976
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|110370959|gb|EC934612.1|EC934612
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|30297299|gb|CB974093.1|CB974093
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGTCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|34544409|gb|CF512641.1|CF512641
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|56409540|gb|CX017792.1|CX017792
EST:     TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|161710525|gb|FC058533.1|FC058533
EST:     TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: gi|56409207|gb|CX017459.1|CX017459
EST:     TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG                         CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgttaaattgcttttggcctacaaaatctgaaagaggggcttgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAAAGCCAAGGGGAACACTTACAATAGATACTCCACAATTGTGACTAACAA
                                           cttgtttt  CT-rich tract
      ttaaatt  TA-rich tract