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...aaaaaaaaattggttgctgtatattggagaagaaggtaactggtgctgaattagaaattccttcttttttcttaaaattttgtgacatgaattttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGC
species | Vitis vinifera |
transcript | Vv02s0012g01170.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTTTAAGCCATTATCAGCCTTCCTCAACAATCTTTGCCTTCACTAATGA AGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTEST: gi|27586266|gb|CB008961.1|CB008961
genomic: ACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAgtaagtccaa ... attttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATT
EST: ACTTTAAGCCATTATCAGCCTTCCTCAACAATCTTTGCCTTCACTAATGA AGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGEST: gi|110388166|gb|EC952886.1|EC952886
genomic: ACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAgtaagtccaa ... attttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTG
EST: ACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGA AGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTEST: gi|30131201|gb|CB916540.1|CB916540
genomic: ACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAgtaagtccaa ... attttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATT
EST: ACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGA AGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATT
genomic: ACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAgtaagtccaa ... attttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATT
ctgaattagaaattccttcttttttcttaaaattttgtgacatgaattttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGC
aaattccttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaaaattggttgctgtatattggagaagaaggtaactggtgctgaattagaaattccttcttttttcttaaaattttgtgacatgaattttggcagAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
aaaaaaa
- - - - - tggttgc
- - - - - - - - - - - - - -agaagaa
- - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacatga