Sequence
atgc intronic sequence ATGC exonic sequencegtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G26300.1 (Glycine max), 3'ss of exon 11
gtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
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gtgagagataa-----ggcctatcagacatgttctcctagtggt-----tgaatcgcttccagttttcatac---ttccacatgtatacagGTGTTTTCAATCTTTGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACAAGTGAAGTCAGTGTTTCCTTGACATTGGATCCATCAAAGCTATGGAGCA
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G05380.1 (Glycine max), 3'ss of exon 9
gtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
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gttagaaag---ctaaaacctgccagacctgtgctctcagtggctgagtctcttcctatcttcgaagacttaagcatatcagttgatgcagGTATTTTCAATATTCGAAGAGTTAGGTATATCAGTTGATGTTGTAGCTACAAGTGAAGTTAGTATTTCCTTGACATTGGATCCATCAAAGCTATGGAGCA
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G07300.1 (Glycine max), 3'ss of exon 10
gtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
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gtgagagataatgcctatcagacgt-gttctcctagtggttg---------aatcccttccagttttcatac---ttccacatgtatacagGTGTTTTCAATCTTTGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACAAGTGAAGTCAGTGTTTCCTTGACACTGGATCCATCAAAGCTATGGAGCA
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G27500.1 (Glycine max), 3'ss of exon 9
gtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
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gtgagaa--agctaacacctgtcagacctgtgctcccagtggttgagtctc--ttcctatcttcgaagacttaggctaacagttgatgcagGTATTTTCAATATTCGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACAAGTGAAGTTAGTATTTCCTTGACATTGGATCCATCAAAGCTATGGAGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
ttctaac putative branch site (score: 1)
ctttatcc putative PPT
acatataaattctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcagGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG