Sequence
atgc intronic sequence ATGC exonic sequence...gattggtgttctatatatttgttttctcttgaatagggggtccattacagttcatccatcacttatgttttgttcatacaattccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0244g00070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g70320.1 (Oryza sativa), 3'ss of exon 10
gattggtgttctatatatttg-ttttctcttgaatagggggtccat---tacagttcatccatcacttatgttttgttcatacaat--tccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
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------tctcgaaaatgcttaattctagtttgcacatgatgttgaaatgtactgttaactttttccctgtccgtgatttatctgatggcccattaataacttgaagGAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGA
upper sequence: Vv01s0244g00070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G126266_T01 (Zea mays), 3'ss of exon 9
gattggtgttctatat-atttgttttc-tcttgaatagggggtccattacagttcatccatcacttatgttttg---ttcatacaattccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
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-----atgcacagtatgacctgcctgcatcagtggcacttaactgctgatattttgttacccaccttattcttgattttctgatgattaattaatcaacttcaagGTGTGTATCCCGAAATTGCGGTATCAAAGCATGAACATTGGTCATCATTGGCTCCTCTTCCTCTTGAGGTTGTTCTTTCCGCCGGTCAAAAAGCTAAGGA
upper sequence: Vv01s0244g00070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G44630.1 (Glycine max), 3'ss of exon 10
--gattggtgttctatatatttgttttctcttgaatagggggtccattacagttcatccatcacttatgttttgttcatacaattccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
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tatatctagtttgaattcagccgatttgtataaagtgaataatt--tcatgattcacttactgctgttttctatctagtgtaactttttccatggtgtatagGCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAGCCCCTCTTCCGTTCGAGGTCGTTGTTTCTGCTGGACAAAAGGCTAAGGA
upper sequence: Vv01s0244g00070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G13260.1 (Arabidopsis thaliana), 3'ss of exon 10
gattggtgttctatatatttgttttct--cttgaatagggggtccattacagttcatccatcacttatgttttgttcatacaattccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
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gtaaggagtaacaaacatctgcttaacgacataactagaactttcatgcca--tcgtgtatc-tttgcttcttg---acatatgtgcatatttgcatttcagGAATATGTTCGGATATAGCTACGTCCAAGTACGAATACTGGTCATCTCTGGCTCCTCTTCCTTTTGAAATTGTGCTGTCAGCTGGACAGAAGGCTAAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30256328|gb|CB972171.1|CB972171EST: GTTTAGCTGCAAGGCATG GTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAG
genomic: GTTTAGCTGCAAGGCATGgtaatcatgt ... tgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAG
EST:
gi|30256262|gb|CB972105.1|CB972105EST: TCTTAAGAGGTGTTGGCTTGCTCGCTATTGGGGTTTAGCTGCAAGGCATG GTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAG
genomic: TCTTAAGAGGTGTTGGCTTGCTCGCTATTGGGGTTTAGCTGCAAGGCATGgtaatcatgt ... tgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacagttcatccatcacttatgttttgttcatacaattccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
ttccttttctgttgc CT-rich tract
ttatgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattggtgttctatatatttgttttctcttgaatagggggtccattacagttcatccatcacttatgttttgttcatacaattccttttctgttgcatagGTATCTGTGCAGATATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- -tggtgtt
- - - - - - - - - - - - - - - - - - - - -ccattac
- - - - - - - - - - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacaa