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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttcagatgtttattgaagttccctgaaatgatgttgtggttgaagcaacagccaatgcctgagctgttaatcctatcctgttatactgttattgttatatgttttcttatcttctgtctgccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTGGGCTTTGCACTCAAG

Basic information

species Vitis vinifera
transcript Vv01s0146g00310.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034261|gb|FQ448058.1|FQ448058
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|351014802|gb|FQ438002.1|FQ438002
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|77587570|gb|DV222950.1|DV222950
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|77577175|gb|DV217284.1|DV217284
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|110378632|gb|EC943772.1|EC943772
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|351029889|gb|FQ427729.1|FQ427729
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCA-TAGGGAAAGCCAAG                         ATTG-GAAGAGAAG-AAGG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGA-GAGAAGGAAGG
EST: gi|349828778|gb|FQ418513.1|FQ418513
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAA
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAA
EST: gi|110371230|gb|EC935083.1|EC935083
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|110685369|gb|EE062030.1|EE062030
EST:     GCAGAAGTTCTTGATTCCAGTTTTTGCCNNTCC-A-TAGGGAAAGCCAAG                         ATTGAGAGAGAAGGA-GGGA
genomic: GCAGAAGTTCTTGATTCCAGTTTTTGCC--TCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGA
EST: gi|110713083|gb|EE088693.1|EE088693
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|110387837|gb|EC952535.1|EC952535
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|349826357|gb|FQ417854.1|FQ417854
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAA
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAA
EST: gi|110428620|gb|EC995097.1|EC995097
EST:     CTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
EST: gi|110398758|gb|EC965232.1|EC965232
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGT
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGG-AAGGGATGTGACTATCACAGCTTTCTCAAAAATGGT
EST: gi|110718877|gb|EE096214.1|EE096214
EST:     CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAG                         ATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG
genomic: CAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGgtaatttttc ... ccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgttatactgttattgttatatgttttcttatcttctgtctgccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTGGGCTTTGCACTCAAG
                          ttttcttatcttctgt  CT-rich tract
             ttattgttatatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttttcagatgtttattgaagttccctgaaatgatgttgtggttgaagcaacagccaatgcctgagctgttaatcctatcctgttatactgttattgttatatgttttcttatcttctgtctgccattaacagATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTGGGCTTTGCACTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG