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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttacattttttttactctcaaatgtggtgtcatatctgggagattcctcatctacatgttctcactgatcacatcctttgttcaacatcttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG

Basic information

species Vitis vinifera
transcript Vv01s0026g01700.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418753|gb|EC984927.1|EC984927
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
EST: gi|110693432|gb|EE069656.1|EE069656
EST:     GTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTNGAA-CTATGCTG                         AAACAGCTTAAACTGCCTGGC
genomic: GTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCT-GAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGC
EST: gi|110379389|gb|EC944580.1|EC944580
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTGCCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
EST: gi|46910317|gb|CN545692.1|CN545692
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTGCCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
EST: gi|71884658|gb|DT033713.1|DT033713
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTGCCTGGCAAGTCCCACGGTTTACTCACATC
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATC
EST: gi|110722964|gb|EE099738.1|EE099738
EST:     TGTGCAATGCTGTTAAAGGAAGAA-TGTACCAATGTCCGAAACTAAGCTG                         TAACAACTTAA-CTGCCTGGCA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCA
EST: gi|110396076|gb|EC961751.1|EC961751
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAGCTATGCTG                         AAACAGCTTAAACTGCCTGGCAAGTCCCACGGTTTACTCACATCTGCAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
EST: gi|110361687|gb|EC925180.1|EC925180
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTGCCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
EST: gi|22011799|gb|BQ796833.1|BQ796833
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTGCCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
EST: gi|46918277|gb|CN547606.1|CN547606
EST:     TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG                         AAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA
genomic: TGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTGgttggtatta ... cttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctcatctacatgttctcactgatcacatcctttgttcaacatcttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG
                                          catcttctttc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttacattttttttactctcaaatgtggtgtcatatctgggagattcctcatctacatgttctcactgatcacatcctttgttcaacatcttctttcagAAACAGCTTAAACTACCTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - ctctcaa
- - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatcc