Sequence
atgc intronic sequence ATGC exonic sequence...cttaaacatttatctcatccttggagaagtatttctttatatcttatgttcctggatcatgtttactttgttatgaaactgtgtctagtttttggtgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G553314_T01 (Zea mays), 3'ss of exon 10
-cttaaacatttatctcatccttggagaagtatttctttatatcttatgttcc-tggatcatgtttac---tttgttatga-aactg-tgtctagtttttgg-----------tgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
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gtatgtgcatttatagattatgcagcagactatgtcattttattgtacattacatgtgtcagactcatcagtgagttacaacatctgctgattgcttgttggacccattattgtgcagATCGAGAAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTACAGAG
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G439885_T01 (Zea mays), 3'ss of exon 8
-cttaaacatttatc--tcatccttggagaagtatttctttatatcttatgtt-cctggatcatgtttactt---tgttatga-aactg-tgtctagtttttgg-tgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
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gtatgtgcatttatagattatgcagcagaatatatgtcattttattgtacattacatgtgtcagactcattagtgagttacaacatctgctgattgcttgttggacccattctcagAAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAG
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 9
cttaaacatttatctcatccttggagaagtatttctttatatcttatgttcctggatcatgtttactttgttatgaaactgtgtctagtt--tttggtgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
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--tacattttgctgtgaaaagtacaaaaccttccagtagacattttttctctcaaatcaatcaagttatctgaccaaagcattttttcttaatgtgaattagGTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAG
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 9
cttaaacatttatctcatccttggagaagtatttctttatatcttatgttcct-ggatcatgtttactttgttatgaaactgtgtctagtttttggtg-----tagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
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------ttttgctgtgaaaagtacaaaaccttccaagtagacaatttttccctcaaagcaatcaagttatctgaccaaagcgtattttttttttaatgtgaactagGTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|156735898|gb|EV240019.1|EV240019EST: AAACATCTGGTCATGCTGCTAATTACAAGGAGAATATGTTTGTATTTGAG GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGT
genomic: AAACATCTGGTCATGCTGCTAATTACAAGGAGAATATGTTTGTATTTGAGgtgtggtttt ... tttggtgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttcctggatcatgtttactttgttatgaaactgtgtctagtttttggtgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
ttttt CT-rich tract
tttacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttaaacatttatctcatccttggagaagtatttctttatatcttatgttcctggatcatgtttactttgttatgaaactgtgtctagtttttggtgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG
- - - - - - -ctcatcc
- - - - - - - - - - - - - - - - - - - - - - - - ttcctgg