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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcatgcgaatgctgctcttgatgctttaactaataacagataattatgaggcatcctttgctttatttgcttacttggacatatatcctggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGAAATTAAATGGCAAATTTGTTACTGCTGAACTTTAAGATCCATGTCCAAT

Basic information

species Vitis vinifera
transcript Vv01s0011g05400.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34549722|gb|CF517954.1|CF517954
EST:     ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG                         AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: gi|83275073|gb|DV939169.1|DV939169
EST:     ATTTGGAGAAATCGAAGAAAACTGCACAAAGCAGATCCTTCAAAAGACTG                         AGTCTCAAGGAAGCACACACCAACTCAAATTCATAAAGGTGGAGTTAGTGA
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: gi|110361352|gb|EC924819.1|EC924819
EST:     ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG                         AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: gi|34544805|gb|CF513037.1|CF513037
EST:     ATTTGGAG-AATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG                         AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: gi|110362276|gb|EC925797.1|EC925797
EST:     ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG                         AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgaggcatcctttgctttatttgcttacttggacatatatcctggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGAAATTAAATGGCAAATTTGTTACTGCTGAACTTTAAGATCCATGTCCAAT
                        tgcttac  putative branch site (score: 2)
                  tttattt  TA-rich tract