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...aaatctttactcactttaggaaccaagcttaaaaatgaagcatgagactacaatatatgccctgtcatgttatgtgatatgtgttcacatttccctccagGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAAAAGGTAGCAGCATTGTATGCCTGATGGCCAGATAAACAGTGAACTGCAT
species | Vitis vinifera |
transcript | Vv01s0011g04920.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAGCATTAGTGCTTTTAAGTGCATGGAGGTAAAAGAAAGAGACTGTGAG GATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAAEST: gi|71885120|gb|DT034175.1|DT034175
genomic: CCAGCATTAGTGCTTCTAAGTGCATGGAGGTAAAAGAAAGAGACTGTGAGgtaagagtct ... ttccctccagGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAA
EST: CCAGCATTAGTGCTTCTAAGTGCATGGAGGTAAAAGAAAGAGACTGTGAG GATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAA
genomic: CCAGCATTAGTGCTTCTAAGTGCATGGAGGTAAAAGAAAGAGACTGTGAGgtaagagtct ... ttccctccagGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAA
gactacaatatatgccctgtcatgttatgtgatatgtgttcacatttccctccagGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAAAAGGTAGCAGCATTGTATGCCTGATGGCCAGATAAACAGTGAACTGCAT
ttcacatttccctcc CT-rich tract
aatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctttactcactttaggaaccaagcttaaaaatgaagcatgagactacaatatatgccctgtcatgttatgtgatatgtgttcacatttccctccagGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAAAAGGTAGCAGCATTGTATGCCTGATGGCCAGATAAACAGTGAACTGCAT
- - - - - - - - - -gaaccaa
- - - - - - - - - - - - - - -taaaaat
- - - - - - - - - - - - - - - - - - - - catgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc