Sequence
atgc intronic sequence ATGC exonic sequence...tctaactgcatttttttataatccatgtgaggattgaaatcagtctcatatattatgcctctatcagttcctcaaaagtttttatttggaattcatgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G373175_T02 (Zea mays), 3'ss of exon 10
----tctaactgcatttttttataatccatgtgaggattgaaatcagtctcatatattatgcctctatcagttcctcaaaagtttttatttggaattcatgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG
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gttggttagggatggaagagtgcagtttttttctttctttttctc---ctggtgtaatgaatatgcattattctgttgaca-cttttgtccactttttgtgcagAAATTAATATTTGATAAGCCTGAGCCTGGAGTAAGGAAAATAGTTCTTGCCACGAATTTGGCTGAAACTAGTATTACTATCAACGATGTAGTTTTTGTTG
upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 5
------tctaactgcatttttttataatccatgtgaggattgaaatcagtctcatatattatgcct-ctatcagttcctcaaaagtttttatttggaattcatgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG
||| | || | | || |||| || ||| | | | | |||| | | | || || || | | | ||| | | || |||||| ||||||||||||| || ||| |||||| ||| | |||||||||||||| || ||||||||||| || ||||||||||| |||||| | |||||||||
tcagataataaagaaacttgtgttta--ccattgtagagttgtggta---tttaaccctcatgcttacaagcaatttcttgataaactatatattgtat--atgcagAGGTTAATATTTGAGGAACCTGAAGATGGAGTACGAAAAATAGTGCTAGCAACAAATATTGCTGAAACTAGTATCACAATAAATGATATTGTTTTTGTTC
upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 13
-------------------------------------------------------------------------------------tctaactgcattttttta--taatccat-----gtgaggattgaaatcagtctcatatattatgcctctatcagt-tcctcaaaagtttttatttggaattc------atgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG
| || | || ||| | || || | || || || | || | | | |||| | | || | ||| || | || |||||| | ||||||||||| |||||| |||||| || || |||||||||||| | || ||||||||||| || |||||||| || |||||||| |||||||||
gtaatgttctgtctgttgatgactactttgttagagttgattttatacaatctgtatgtatgatgatttgttgtctgaaaatagttttagcaatatgtttgtgcttagtcttttgttgaagaaaggtggcatgtgccttgtctccctggttatgatcaatatttacatagatttacataatggatatggcaatatgcagAGATTAATATTTGAAGAGCCTGAAGATGGAGTTAGAAAAATAGTGCTAACAACAAATATTGCTGAAACGAGTATCACGATAAATGATGTTGTTTTTGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatatattatgcctctatcagttcctcaaaagtttttatttggaattcatgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG
tcaaaagtttttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctaactgcatttttttataatccatgtgaggattgaaatcagtctcatatattatgcctctatcagttcctcaaaagtttttatttggaattcatgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG
- - -ctgcatt
- - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - -gattgaaa
- - - - - - - - - - - - - - - - - - - - cagtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaaa