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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcacttttgcttgctactgtggaagacagttaaatgtattatttttttggcagtaaactaagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA

Basic information

species Vitis vinifera
transcript Vv01s0011g02440.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G23210.1 (Glycine max), 3'ss of exon 1
gtgctcacttttgcttgctactgtggaagacagttaaatgtattatttttttggcagtaaactaagtaattggatattttattatc-ttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA
      | |     ||  |  | ||| | ||  ||| |   |||     |||||||  ||| | | |    ||  | ||| || |  || ||| ||||||| | |||||||||||||  ||||||||||| || ||||| |||||||| ||||||||||| |||||||| || 
----gtattgcaaattatttttctgggaaacttttacagagattccaaatttggcatcaaatttacttga-ggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG

upper sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G14300.1 (Glycine max), 3'ss of exon 4
gtgctcacttttgcttgctactgtggaagacagttaaatgtattatttttttggcagtaaact-----aagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA
      | | |   ||  |  | | | |     ||| |   |||     |||||||  ||| |     | || | |   | ||||  | | || ||| ||| ||| | |||||||||||||| ||||||||||| || |||||  ||||||| |||||||| || |||||||| || 
----gtattgtaaattatttttcttggaattttttacagagattccaaatttggcatcaaatttacttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtattatttttttggcagtaaactaagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA
                                       ttttatt  CT-rich tract
                    taaactaagtaattgg  TA-rich tract