Sequence
atgc intronic sequence ATGC exonic sequencegttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 3'ss of exon 4
-------------------------------------gttatggagttacatttt-taaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctg--tgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| ||| |||| | |||| || | | | | | | || || | | | | ||| | || ||||||| || | |||||||||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| || ||||| |||||||| |
gtattactagctagctaataggatccagtaatggtgattaatgtttttactctcagtaaatggacacaatatac--caatttttgtgacaataattgattttccttttgcgtaccctttctgcagTCAATAGCTATTCAGTGTTTGGAGGCACTGCAGTTTTTGCATGGACTTGGTCTTATACATTGTGATCTGAAGCCGGAGAACATATTGGTAAAGAGCTACA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G29970.1 (Glycine max), 3'ss of exon 4
----------------------------------------gttatggagttacatttttaaact--gatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| ||| ||| | | | || | | || | || || | | | | | ||||| || | | || |||||| ||||| |||||||||||||| ||||||||||| ||||| | || || || ||||||||||| ||||||| |||||||||||||| ||||||||||
gtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcagTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAGAGCTATA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G34510.1 (Glycine max), 3'ss of exon 4
---------------------------------------------gttatg-gagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| | | | | | || | | ||| || ||| ||| || || ||| || | ||||| || | | ||||||||| ||||| |||||||||||||| ||||||||||| ||||| | || || || ||||||||||| ||||||| |||||||||||||| || |||||||
gttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctt-tctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G06160.1 (Glycine max), 3'ss of exon 6
-gttatggagttacatttttaaactgatatctttctctcctactgac-atgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
|| ||| || |||| |||| | | | || | | | || || | || || || ||| | ||||| | ||||||||| ||||| |||||||||||||| || |||||||| |||||| |||| || || ||||| || || |||| || |||||||||||||| || |||||||
gtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcat-tgcaaact-cttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G33560.1 (Glycine max), 3'ss of exon 4
-gttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| | | || ||||| |||| | | | | | | | || || || ||| | ||||| | ||||||||| ||||| |||||||||||||| || |||||||| |||||| |||| || || ||||| || || |||| || |||||||||||||| || |||||||
gttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaact-cttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 3'ss of exon 4
gttatggagttacatttttaaactgatatctttctctcctactgacatg---ctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| | || ||| | | || || || | ||| | | | | | || |||| | ||||||| ||||| || || || |||||| | || |||||||||| | |||||||| || |||||||| |||||| |||||||||||||||| |||||||| |||||||
-----gtttgtccactttatcattaccatacatcatagatatgtatatgtatccgattcctgatct-ctttgggaccgttctgtacagTCAATCACTATCCAGTGTCTCGAATCACTTCAGTTTCTACATGGCCTTGGACTTATACACTGTGATTTGAAGCCTGAGAATATATTGGTGAAAAGCTATA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 3'ss of exon 4
gttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| | | || | | | || || || | | | | | |||| || ||||||| ||||| || || || |||||| | || ||||||| || | |||||||| || |||||||| |||||| ||||||||||||| || ||||| || || ||||
-----gtttgtccgcttcatcattaacattcttaatagatatgtataaatccgagttctaatctctttgggatcgttctgtacagTCAATCACTATCCAGTGTCTCGAATCACTTCAATTTCTACATGGCCTTGGACTTATACACTGTGATTTGAAGCCTGAGAACATATTGGTTAAAAGTTATA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ25132 (Selaginella moellendorffii), 3'ss of exon 2
gttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| | |||| | || | | | | | | || || ||||||| ||||| ||||||||||||||||| |||||||||||||||| || | |||||||| ||| ||||||| ||||| || | || |||||||| |
---------------------gtaggaagtgttctagctcacaggtggatt---ttattcttaacactcgaaa----ctttgcagTCTATTACTCGCCAGTGTTTGGAGGCACTGGAGTTCTTGCATGGCCTTGGATTGATACATTGCGATTTGAAGCCGGAGAACATACTAGTAAAGAGCTACA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ29918 (Selaginella moellendorffii), 3'ss of exon 2
gttatggagttacatttttaaactgatatctttctctcctactgacatgctg-gtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
| | |||| | || | | | ||||| | | || || ||||||| ||||| ||||||||||||||||| |||||||||||||||| || | |||||||| ||| ||||||| ||||| || | || |||||||| |
---------------------gtaggaagtgttctagctcacaggtggattttattcgtaac----tctcgaaa----ctttgcagTCTATTACTCGCCAGTGTTTGGAGGCACTGGAGTTCTTGCATGGCCTTGGATTGATACATTGCGATTTGAAGCCGGAGAACATACTAGTAAAGAGCTACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
ttgttct CT-rich tract
ttttaaattgttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT