Sequence
atgc intronic sequence ATGC exonic sequencegtatgtaatgcagaaaactgagatagactgtttcattttctggtgaatggggttagggctaatgaattttctgatcaatcatagctaaagatagatgggtttggcatctgctgtccaagtccatggctctatcagttggtttaagtcttctaaagtaagtggttttgttgggctacagGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g00750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G06980.1 (Glycine max), 3'ss of exon 7
gtatgtaatgcagaaaactgagatagactgtttcattttctggtgaatggggttagggctaatgaattttctgatcaatcatagctaaagatagatgggtttggcatctgctgtccaagtccatggctctatcagt--tggtttaagtcttctaaagtaagtggttttgttgggctacagGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAA
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------------------------------------------------------------------tatctaaatcaattgcttgcattcatcaa--aattacaaattggatctctaaactctaaaatttatcaatcatggtgatggaattctaa------------ttatgacttgcagGCAAATTCTATATGGTTGTACATAGTACCACACGGAATGAGAAACACAATGAATTACATCAAACATACGTATGGAAATCCTATAGTCATTGTCACAGAAA
upper sequence: Vv01s0011g00750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G26560.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtaatgcagaaaactgagatagactgtttcattttctggtgaatggggttagggctaatgaattttctgatcaatcatagctaaagatagatgggtttggcatctgctgtccaagtccatggctctatcagttggtttaagtcttctaaagtaagtggttttgttgggctacagGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAA
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--------------------------------------------------------------------gtaagaaacattatatagtaactctaattagttatacttctcccaa--aagtgattagtactgtcgaatttctctaagcttgtgttacatttgttgttgttgcgg-acagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggctctatcagttggtttaagtcttctaaagtaagtggttttgttgggctacagGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAA
ttctaaa putative branch site (score: 2)
ttttgtt putative PPT
taaagtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtaatgcagaaaactgagatagactgtttcattttctggtgaatggggttagggctaatgaattttctgatcaatcatagctaaagatagatgggtttggcatctgctgtccaagtccatggctctatcagttggtttaagtcttctaaagtaagtggttttgttgggctacagGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA