Sequence
atgc intronic sequence ATGC exonic sequencegttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTTAATGAACATTGATGGATGGATACCAAGGGAGCAAATTTTGGGTGCCGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G10870.1 (Glycine max), 3'ss of exon 11
gttagttgattattattgtttgcatttgcattttgtttttt-ctccctcaagtgctggttatca--attacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactc-------ttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTTAATGAACATTGATGGATGGATACCAAGGGAGCAAATTTTGGGTGCCGAA
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-----------gttagtttttttgttctaataatatccttcacgaccaccaccacca-ttattactattattgttgttgttgactgcacaagacttacctttatta---attaacaaataaattacctgtgatgta-taaatatgctttgcacttgtgcacattaaccagGCGTTGGGATATTCATATTTCGTTGGATATCATTGGACATTGGTTAGATTTGATTAATGTTGATGGATGGATACCACGTGAACAGATTTTAGGGGCTGAA
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G27890.1 (Glycine max), 3'ss of exon 10
-----------------------------gttagtt-gattattattgtttgcatttgcattttgttttttctccctcaagtgctggttat---caattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactc-ttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTTAATGAACATTGATGGATGGATACCAAGGGAGCAAATTTTGGGTGCCGAA
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gttagtttcttgtgctaataatatccttcatgacctcaaccactactactatcatcattatcat-ttgtctttgtttgaaattcagtttaagtgcagttttcttgactgcacaagacttactggtattatttagcaaaca--aataatctatgatctgtaaatatgtttttttgatcttgttcacattaaccagGCGTTGGGATATCCATATTTCATTGGATATCATTGGACACTGGTTAGATTTGATGAATGCTGATGGATGGATACCACGTGAACAAATTCTCGGGGCTGAA
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 10
---------gttagttgattattattgtttgc-atttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTTAATGAACATTGATGGATGGATACCAAGGGAGCAAATTTTGGGTGCCGAA
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gttagtttttttgttctaataatatccttcattaccaccacctctagtattattattgttgttgttgttgttgactgcacaagacttacctggattaattaacaaataaattactcgtgatgtatacatattctttatttgcacttg---------tgcacattaaccagGCGTTGGGATATTCATATTTCGTTGGATATCATTGGGCATTGGTTGGATTTGATGAATGTTGATGGATGGATACCGCGTGAACAAATTTTGGGGGCTGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77583689|gb|DV220878.1|DV220878EST: TTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTG GCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTT
genomic: TTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgat ... tcttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTTAATGAACATTGATGGATGGATACCAAGGGAGCAAATTTTGGGTGCCGAA
ttctgac putative branch site (score: 2)
ctctt CT-rich tract
aaataaatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTTAATGAACATTGATGGATGGATACCAAGGGAGCAAATTTTGGGTGCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA