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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatctcatcgacatctctggagccaccagaagttatatttccatgtcaggcagctgtcgtatattcatattctaataatatacttttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG

Basic information

species Vitis vinifera
transcript Vv00s0561g00030.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0561g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S79_75V6.1 (Physcomitrella patens), 3'ss of exon 11
---------------------------------------------aaatctcatcgacatctctg--gagccaccag------aagttatatttccatg-----tcaggcagctgtcgtatattcatattctaataatatacttttgacccatta----cagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
                                             |  |    |||  || | ||  | |  |  |       || || |||| |         || | |   | |  | | ||  | || |  |  | |  ||||      | |     ||||| ||||| |||||||||||||| || ||  | ||||| || |||||||| ||||||||||||||||||||||||
gtaagaaccaatctctttgtaaaatgcgaattttttataagatttacgttgattcggaatgtttgtagggttaggaacgaagtaaattctattactgaacttgatctgaccctttttttttttttttttttttttttttttttttttttttctgaaccttagGCCTTTGCGAGGTTTTGATCTTGTCAAAGACCGGGACACTGGGAACTCTAAAGGATATGGTTTCTGTGTTTATCAG

upper sequence: Vv00s0561g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S58_254V6.1 (Physcomitrella patens), 3'ss of exon 12
----------------------------------aaatctcatcgacatctctggagccaccagaagttata---tttcc--atgtcaggcagctgtcgtatattc-----atattctaat--aatatact-tttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
                                  ||||||   | ||   |  |  |       | | | ||   ||| |  | || |   |||| ||    |        |  || | ||  ||| ||   |||     | | |||||| ||||| |||||||||||||| || ||  | |||||||| |||||||| ||||||||||||||||| ||||||
gtaaggaacggcttacatttgaaacatgggcatgaaatctatacaaccatttcgttgatgttgaatgctttaaggttttcgaacgtgataaagctatccaccaccttagcgaggtttttatctaatttaaggtttcttgaactccagGCCTTTGCGAGGTTTTGATCTTGTCAAAGACCGGGACACAGGCAACTCTAAAGGATATGGTTTCTGTGTATATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaggcagctgtcgtatattcatattctaataatatacttttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
               tatattcatattctaa  TA-rich tract