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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatttattcttgtgcttgttatacttctaccatctcttttatcaagtaacagtttatgctaattttatgatctcatttgttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT

Basic information

species Vitis vinifera
transcript Vv00s0531g00050.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0531g00050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G00910.2 (Glycine max), 3'ss of exon 11
gtaaggatttattcttgtgcttgttatacttctaccatctctttta-tcaagtaacagtttatgctaattttatgatctcatttgttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
                      || |    |  | ||  | ||||  |||   ||  |  |||||||||| | |  ||    || ||   ||||||||||||||||||| ||||| ||| | |||||||||||||||
----------------------gtaaggaatacagcacatattttgctcattcaagtgaatatgctaattgtgt--tccaccttcttcaatgcagGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGGTCTTGATCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30301836|gb|CB978630.1|CB978630
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|30301768|gb|CB978562.1|CB978562
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|30329769|gb|CD013031.1|CD013031
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|34362568|gb|CF404153.1|CF404153
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|110358833|gb|EC923335.1|EC923335
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|110381509|gb|EC934651.1|EC934651
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|30298600|gb|CB975394.1|CB975394
EST:     GCCTGAAGGCTCCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|110376548|gb|EC941608.1|EC941608
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|27585769|gb|CB008464.1|CB008464
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|110378421|gb|EC943552.1|EC943552
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|110395476|gb|EC961142.1|EC961142
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
EST: gi|110361851|gb|EC925352.1|EC925352
EST:     GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCC                         GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
genomic: GCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCgtaaggattt ... ttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttatcaagtaacagtttatgctaattttatgatctcatttgttttctgcagGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT
                      tgctaat  putative branch site (score: 2)
                                    tctcatttgttttct  putative PPT
                  tttatgctaattttat  TA-rich tract