Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaaactttctgtttctgttcttccctttttcagttacaactagttgagaacaatttcgtttcttggcttactatttccttctttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G39450.1 (Glycine max), 3'ss of exon 9
---------------------gtaagtaaactttctgtttctgttcttccctttttcagttacaac-tagttgagaacaatttcgtttcttggcttactatttccttct----ttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG
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gttggttaatttttagataatgtac-cagatgcattatttgaaatcattcatgcaaaaagtataggatcgagggatacaagttactttaatgatcatttgtcaccttttaattcttcacacagGAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATG
upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G01310.1 (Glycine max), 3'ss of exon 9
gtaagtaaactttctgtttctgttctt------ccctttttcagtta-caactagttgaga---acaatttcgtttcttggcttactatttccttc----tttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG
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gttggttaatttgtagataatattatttgaaatccttcatgcaaaaagtatacaatcgagggatataaattactttattgatcatttgtcaccttttaattcttcacacagGAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATG
upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 7
gtaagtaaactttctgtt--tctgttcttccctttttcagttacaactagttgagaacaatttcgtttcttggcttactatttccttctttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG
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gtaggttaagttcttgacaatctactcattaacattgtagtaatttct--tcattgataaaattgatgactgattgatt-catgatcctgactctgtagGAGCACATGTTGGACCAGAACCTACCACCGATAGATTTGTTGTTGTCATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactagttgagaacaatttcgtttcttggcttactatttccttctttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG
ggcttac putative branch site (score: 3)
tttcttggcttactat CT-rich tract
ttactattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaaactttctgtttctgttcttccctttttcagttacaactagttgagaacaatttcgtttcttggcttactatttccttctttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA