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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgattattgtagaaggaaataaacttgaaagcttgaagaaattaactcaaatcttttttgtcaatttgataaatttgttttgctttattctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAATTAGAGATTCTGTGTAACATCTATGCCTTGTACCTTCTTCACAAATAC

Basic information

species Vitis vinifera
transcript Vv00s0389g00020.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548572|gb|CF516804.1|CF516804
EST:     GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|33403015|gb|CF208642.1|CF208642
EST:     GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|110416873|gb|EC982881.1|EC982881
EST:     GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|110403052|gb|EC964143.1|EC964143
EST:     GCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|34548486|gb|CF516718.1|CF516718
EST:     GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|27579018|gb|CB001713.1|CB001713
EST:     GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|30252118|gb|CB968757.1|CB968757
EST:     GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAGGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|27581522|gb|CB004217.1|CB004217
EST:     GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|27581734|gb|CB004429.1|CB004429
EST:     GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|110389639|gb|EC954494.1|EC954494
EST:     GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: gi|33402926|gb|CF208553.1|CF208553
EST:     GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA                         GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcaaatcttttttgtcaatttgataaatttgttttgctttattctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAATTAGAGATTCTGTGTAACATCTATGCCTTGTACCTTCTTCACAAATAC
                              tttgttttgctttatt  CT-rich tract
     aaatcttttttgtcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgattattgtagaaggaaataaacttgaaagcttgaagaaattaactcaaatcttttttgtcaatttgataaatttgttttgctttattctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAATTAGAGATTCTGTGTAACATCTATGCCTTGTACCTTCTTCACAAATAC

- - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - aaattaa