Sequence
atgc intronic sequence ATGC exonic sequencegtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G14290.1 (Glycine max), 3'ss of exon 7
gtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA-
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---------------------------gtaagttacctctgatggtgatgtataattttattttgttttttgtttctcaac--gaatgatttctctgttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATG-GAGCAATTGATGGTGAAG
upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G31080.1 (Glycine max), 3'ss of exon 7
gtgagtagatctccaataatgctaaaagaaaatgctttcagaatctat-tattggtttgttttttcacatctactctctgattgggatcattgcttcc--ctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA-
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--------------------------gtaagttacctctgatggtgatgtataattttattttgttattcttgtttctcaat--gaatgatttctttctgtcatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGCGGTGCAGGTTCCAGAGGTTCTTGGAATG-GAGCAATTGATGGTGAAG
upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G01960.1 (Glycine max), 3'ss of exon 7
gtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA-
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-----------gtaagctacctttaaagatgatga----ggagtttgactttgttatcatatttcctgttt---ctcaaagacggatcatt--tttgtgatttcagGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGCATGGGGGGAAGCAGAGGATCTTGGAATG-GAGCAGTTGAGGGCGAGG
upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S81_162V6.1 (Physcomitrella patens), 3'ss of exon 6
------------gtgagtagatctccaataatgctaaaagaaaatgct----ttcagaatctattat--tggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA
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gtgagcctcgctgccttttactgtttggttttatcaataataattctagtagctcaaaattctttagaatggtttgatgctacgtgttggaattc-gtcttaaaccatt-tttttctatcgcagGATTATGGTAGCGCCTTTGATCTTTTCGAATCCCTCTTTGGGGGCATGGGAGGAATGGGAGGCATGGGAGGCATGGGCGGAGCTCCTCGCAGCAGGGCCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA
ctctgat putative branch site (score: 4)
ttgcttccct putative PPT
tgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccagGATTTCAGCAACCCATTTGATCTTTTTGAGTCGCTCTTTGAAGGCATGGGTGGTATGGGTGGTATGGGTGGCATGGGCGGCATGGGCGGCAGAAGTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT