1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatgtgattgatgcatatagcatcatttatacaagaacctttttaacttttattctttccaacatgctactaatgattccgttgtggtcctttgtaacagTGGTATCCTGCCTGCAGTAGATCTTATAGGTGACCATGTTTTGGTTGGG
species | Vitis vinifera |
transcript | Vv00s0301g00030.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCTTTGCTGCTGTTGCTCCTCCTGTTATTTTCCATGGGAAATCTCTTAC TGGTATCCTGCCTGCAGTAGATCTTATAGGTGACCATGTTTTTGGTTGGG
genomic: ATCTTTGCTGCTGTTGCTCCTCCTGTTATTTTCCATGGGAAATCTCTTACgtaagttctt ... tttgtaacagTGGTATCCTGCCTGCAGTAGATCTTATAGGTGACCATGTTTT-GGTTGGG
acttttattctttccaacatgctactaatgattccgttgtggtcctttgtaacagTGGTATCCTGCCTGCAGTAGATCTTATAGGTGACCATGTTTTGGTTGGG
tactaat putative branch site (score: 1)
tcctttgt putative PPT
tattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtgattgatgcatatagcatcatttatacaagaacctttttaacttttattctttccaacatgctactaatgattccgttgtggtcctttgtaacagTGGTATCCTGCCTGCAGTAGATCTTATAGGTGACCATGTTTTGGTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - -gatgcat
- - - - - - - - - agcatca
- - - - - - - - - - - - - - - - aagaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggt